BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480605
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17220.1 | Symbols: | Protein kinase superfamily protein | ... 2518 0.0
> AT2G17220.1 | Symbols: | Protein kinase superfamily protein
| chr2:7487654-7490167 REVERSE LENGTH=1856
Length=1856
Score = 2518 bits (1363), Expect = 0.0
Identities = 1601/1712 (94%), Gaps = 32/1712 (2%)
Strand=Plus/Plus
Query 1 tctctctcttctctcAATGCCCATGAATGATATCTAACCACTTGCTTATGCTTCTCACAC 60
||||||||||||||||||||||||| || | | | |||||||||||| ||||||||||||
Sbjct 15 TCTCTCTCTTCTCTCAATGCCCATG-ATAACACCAAACCACTTGCTTCTGCTTCTCACAC 73
Query 61 CAC-AAATTCTCTATTCAATAAATAAATCTGTCAGAAGAAATTTCGTCGACTTGGAGCCG 119
||| |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |
Sbjct 74 CACAAAATTCTCTATTCAATAAATAAATCTCTCAGAAGAAATTTCTTCGAATTGGAGAAG 133
Query 120 ATaaaaaaaGttttatcttttc----tttttattc---tttttctAATCATTCACAGCCA 172
|||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||
Sbjct 134 ATAAAAAAAGTTTTATCTTTTCTTGATTTTTTTTCTTTTTTTTCTAATCATTCACACCCA 193
Query 173 ATTTAAACGATACTTGTCCGATCTCTATCCATCAATATTGTATCTTTTCTTGTAAAGTAC 232
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 194 ATTTAAACGAGACTTGTCCAATCTCTATCCATCAATATTGTATCATTTCTTGTAAAGTAC 253
Query 233 TCTGTTTTAGCTTAACACGCCAtttttt-tttCTCTC-TTTGACTTGTGTAAAATCCTGA 290
||||||||||||| |||||||||||||| ||| || | |||||||| |||||||||||||
Sbjct 254 TCTGTTTTAGCTTCACACGCCATTTTTTGTTTTTC-CATTTGACTTCTGTAAAATCCTGA 312
Query 291 CAAAGGTATTGTTTAAGACAGACAGAGATACGTGTTATATATTTGTAAAGGAGGCAAAAA 350
|||| | ||||||||||||| || | ||||||||||||||||||||||||| |||||||
Sbjct 313 CAAA-GAATTGTTTAAGACATAC--ATATACGTGTTATATATTTGTAAAGGAAGCAAAAA 369
Query 351 GGGTCTGGCTTTTAATTTTTCTTTGTTGGGATGGGACTTTGTTGGGGATCTCCATCTGAT 410
| || ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 370 GTGTTTGGCTTTTAATTTCTCTCTGTTGGGATGGGTCTTTGTTGGGGATCTCCATCTGAT 429
Query 411 TCTCCTCCAACAGCAACACCTACCTCTACTGGTAACATCAGTTCAGTAGGGACTTTTAAG 470
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCTCCTCCAACAACAACACCTTCCTCTACTGGTAACATCAGTTCAGTAGGGACTTTTAAG 489
Query 471 TCATCAAACAACACGACGACTACAGGAACATCAAGGGGAAGTAACATATCTAGCAATAGT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TCATCAAACAACACGACGACTACAGGAACATCAAGGGGAAGTAACATATCTAGCAATAGT 549
Query 531 GGCTTCTCTGTGGCAAGTGGTGAAGATGCTTATCCCGATGGTCAGATACTTCCTATTCCG 590
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 550 GGGTTCTCTGTGGCAAGTGGTGAAGATGCTTACCCCGATGGTCAGATACTTCCCATTCCG 609
Query 591 AATTTGAGGATATTCAGCTTAGCAGAACTTAGAGCTGCAACAAGGAATTTCAGGTCTGAG 650
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 610 AATTTGAGGATATTCAGCTTAGCAGAACTTAGAGCTTCAACAAGGAATTTCAGGTCTGAG 669
Query 651 AATGTTCTTGGAGAGGGAGGATTTGGTAAAGTCTTTAAGGGCTGGCTTGAAGACAAGACG 710
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 670 AATGTTCTTGGAGAGGGAGGATTTGGGAAAGTCTTTAAAGGCTGGCTTGAAGACAAGACT 729
Query 711 GCTGGGAAACACAGTAATGGAACTGTGATTGCTGTTAAGAAACTGAATGCAGAAAGCTTC 770
| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CCAGGGAAACAAAGCAACGGAACTGTGATTGCTGTTAAGAAACTGAATGCAGAAAGCTTC 789
Query 771 CAAGGATTCGAGGAATGGCAATGTGAAGTGAATTTTCTTGGGAGGGTTTCTCATCCAAAC 830
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CAAGGATTCGAAGAATGGCAATGTGAAGTGAATTTTCTTGGGAGGGTTTCTCATCCAAAC 849
Query 831 CTGGTGAAACTGTTGGGATATTGCTTGGAAGGTGAAGAATTGCTTCTTGTGTATGAGTAT 890
|| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 850 CTCGTGAAGCTGTTGGGATACTGCTTGGAAGGTGAAGAGTTGCTTCTTGTGTATGAGTAT 909
Query 891 ATGCAGAAAGGGAGCTTAGAGAATCATCTCTTCCGAAAGGGCTCTTCCGTTCAGCCGCTC 950
||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 910 ATGCAAAAAGGGAGCTTAGAGAATCATCTCTTCCGAAAGGGGTCTGCCGTTCAGCCACTC 969
Query 951 TCATGGGAGATAAGGCTTAAGATTGCAATAGGAGCAGCTAAAGGCTTAGCCTTCTTGCAC 1010
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 970 TCATGGGAGATAAGGCTTAAGATTGCAATAGGAGCAGCTAAAGGCTTAGCATTCTTACAC 1029
Query 1011 GCTTCAGAAAAGCAAGTAATTTATCGAGACTTCAAAGCGTCAAACATTCTACTTGATGGG 1070
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GCTTCAGAGAAGCAAGTAATTTATCGAGACTTCAAAGCGTCAAACATTCTACTTGATGGG 1089
Query 1071 TCATATAACGCAAAGATATCGGATTTTGGATTGGCGAAATTAGGTCCTTCCGCGAGTCAA 1130
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1090 TCATATAACGCAAAGATATCAGATTTTGGATTGGCGAAATTAGGACCTTCCGCTAGTCAA 1149
Query 1131 TCTCACATCACAACACGGGTTATGGGTACACATGGTTATGCAGCTCCAGAGTATGTTGCT 1190
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1150 TCTCACATCACAACACGGGTTATGGGTACACACGGTTACGCAGCTCCAGAGTATGTTGCT 1209
Query 1191 ACAGGTCACTTGTATGTAAAAAGTGATGTTTACGGGTTTGGCGTTGTTTTGGCTGAGATC 1250
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1210 ACAGGTCACTTGTATGTAAAGAGCGATGTTTACGGGTTTGGCGTTGTTTTGGCTGAGATC 1269
Query 1251 TTAACTGGTTTACATGCGCTTGATCCTACCCGTCCTACCGGGCAACACAATCTAACCGAC 1310
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1270 TTAACTGGTTTACATGCGCTTGATCCTACTCGTCCTACCGGGCAACACAATCTAACCGAA 1329
Query 1311 TGGATCAAACCTCATCTATCTGAAAGAAGAAAGCTAAGGAGCATAATGGACCCTCGTCTA 1370
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1330 TGGATCAAACCTCATCTATCCGAAAGAAGAAAGCTAAGAAGCATAATGGACCCTCGTCTA 1389
Query 1371 GAAGGAAAATACCCTTTCAAATCCGCTTTCCGAGTCGCTCAACTGGCTTTGAAATGCCTT 1430
||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct 1390 GAAGGAAAATACCCTTTCAAATCTGCTTTCCGAGTAGCTCAACTGGCTCTGAAATGCCTT 1449
Query 1431 GGACCCGAACCCAAAAACCGTCCATCGATGAAAGAAGTGGTTGAATCGCTCGAACTCATC 1490
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1450 GGACCCGAACCCAAAAACCGTCCATCGATGAAAGAAGTGGTGGAATCGCTCGAACTCATC 1509
Query 1491 GAAGCTGCCAACGAGAAACCGTTAGAACGAAGGACCACTAGAGCTTCGCCATCCATCCGT 1550
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1510 GAAGCTGCCAATGAGAAACCGTTAGAACGAAGGACCACTAGAGCTTCCCCATCCATCCGT 1569
Query 1551 CAACAACAAGGCCATTATCGCCCGCAACAACTCTCTTCATTTCGTCCTCGGCATACCGTG 1610
|||||||||||||||||||||||||||||||||||||| ||||||||| | || | ||||
Sbjct 1570 CAACAACAAGGCCATTATCGCCCGCAACAACTCTCTTCGTTTCGTCCTAGACAAAACGTG 1629
Query 1611 GCTCGAGCTCACTAGTGTTGttt--------t----tt-tttt---AGTTTTGTATTTGT 1654
|||||||||||||||||||||| | || |||| ||||||||||||||
Sbjct 1630 TCTCGAGCTCACTAGTGTTGTTTGAAGACACTGAGATTCTTTTCTTAGTTTTGTATTTGT 1689
Query 1655 TAAAGATAAACAGAACCCATTCGTATGTATAC 1686
||| ||| | || |||||||||||||||||||
Sbjct 1690 TAA-GATTATCAAAACCCATTCGTATGTATAC 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5