BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480606
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17230.1 | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494536-74... 1664 0.0
> AT2G17230.1 | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494536-7496016
REVERSE LENGTH=1481
Length=1481
Score = 1664 bits (901), Expect = 0.0
Identities = 1046/1116 (94%), Gaps = 9/1116 (1%)
Strand=Plus/Plus
Query 1 aacaacaacaaacacacaacaTCTGTTAACTCCTTAAACATCCCCTCCGCCGCGGCGGAG 60
|||||||||||||||||| || | |||||||||||||| |||||||||||||||||||||
Sbjct 121 AACAACAACAAACACACAGCAACCGTTAACTCCTTAAATATCCCCTCCGCCGCGGCGGAG 180
Query 61 ATTGA-GCTCGTTAACCCTAAA-CTTCCGCCGCGAAGTCTCTCACTCACATCCTCCAAAA 118
||| | ||| || ||||| ||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 181 ATT-ACGCTAGTAAACCC-AAAGCTTCCGCCGCGGAGTCTCTCCCTCACATCCTCCAAAA 238
Query 119 AATTCGAAGGATCTTCCAATCTAATCCACCTCCGTTACCATATGGGACCAGTCCTCTCTT 178
|||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| |
Sbjct 239 AATTCGAAGGATCTTCAAATCTAGTCCACCTCCGTTACCACATGGGACCAGTCCTCTCAT 298
Query 179 CTTCTCCGATCAACATCTACGTTATCTGGTACGGACGCTGGTCACGCCCACACAAATCCT 238
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 CTTCTCCGATCAACATCTACGTTATCTGGTACGGACAATGGTCACGCCCACACAAATCCC 358
Query 239 TAATCAGAGATTTCCTCAATTCAATCTCCGACGCTAAAGCTCCTTCTCCCTCCGTCGCTG 298
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
Sbjct 359 TAATCAGAGATTTCCTCAATTCTATCTCCGACGCTAAAGCACCTTCTCCCTCCGTCTCCG 418
Query 299 AATGGTGGCGCACCGCTTCTCTCTACGCAGATCAAACCGGAGCCAACGTGTCAAGATCCG 358
|||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||
Sbjct 419 AATGGTGGCGCACCGCTTCTCTCTACACAGATCAAACCGGATCCAACGTCTCTAGATCCG 478
Query 359 TCTTAATCGCCGGTGAATACTCCGATTCGAATTACTCCCACGGCCAACACCTAACTCGTC 418
| ||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 479 TTTTAATCGCCGGAGAATACTCCGATTCTAAATACTCCCACGGCCAACACCTTACTCGTC 538
Query 419 TGACGATTCAAGACGTTATCGCCTCCGCCGCGAGATCCGCTTCGTTTCCGGTGGATCACA 478
| |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 539 TCACGATTCAGGAAGTCATCGCCTCCGCCGCCAGATCCGCTTCCTTTCCGGTGGATCATA 598
Query 479 AAAACGGAATGTATCTAGTTCTGACGTCACACGACGTCACGATGCAAGACTTTTGCCGCG 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 AAAACGGAATGTATCTAGTTCTGACGTCACACGACGTCACGATGCAAGATTTTTGCCGCG 658
Query 539 CGGTCTGTGGTTTTCACTATTTCACTTTCCCGTCGATGGTTGGTTACACTATGCCTTACG 598
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCGTTTGTGGATTTCACTATTTCACTTTCCCGTCGATGGTTGGTTACACTATGCCTTACG 718
Query 599 CTTGGGTTGGTCAATCGGGAAAACAATGTCCCGAAGTTTGTGCTTACCCGTTTGCATTAC 658
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 719 CTTGGGTTGGTCAATCGGGAAAACAATGTCCCGAGGTTTGTGCTTATCCATTTGCTTTAC 778
Query 659 CGGGTTATATGGGTCACGGTGGTCCGGGAGAGCTCCGACCACCGAACGGAGAGACTGGTG 718
||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 779 CGGGTTACATGGGACACGGTGGTCCCGGAGAGCTCCGGCCACCGAACGGAGAGACTGGAG 838
Query 719 TAGATGGGATGGTTAGTGTAATTGGTCATGAGTTAGCTGAAGTTGTATCGAATCCGTTGA 778
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TAGATGGGATGGTTAGTGTGATTGGTCATGAGTTAGCTGAAGTTGTATCGAATCCGTTGA 898
Query 779 TTAATGCTTGGTACGCCGGAGAAGATCCGACGGCTCCGACGGAGATCGGTGATTTGTGTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTAATGCTTGGTACGCCGGAGAAGATCCGACGGCTCCGACGGAGATCGGTGATTTGTGTG 958
Query 839 AAGGATTGTACGGTATCGGCGGAGGAGGAGGGTATATTGGTCAAGTAATGAGAGATAGAG 898
| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 AGGGATTGTACGGAAGCGGCGGAGGAGGAGGGTATATTGGTCAAGTTATGAGAGATAGAG 1018
Query 899 AAGGGAAGACTTTTAATATGAATGGTAAAGGAGGAAGAAAGTTTTTAGTTCAATGGATTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAGGGAAGACTTTTAATATGAATGGTAAAGGAGGAAGAAAGTTTTTAGTTCAATGGATTT 1078
Query 959 GGAACCCTAATCTGAAAGCTTGCTCTGGTCCTAACTCTGTGGACTAAAACGAA-GAAGAT 1017
||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1079 GGAACCCTAATTTGAAAGCTTGCTCTGGTCCTAACTCTGTCGACTAAAAA-AACGAAGAA 1137
Query 1018 GAATGTTAATGATGGTGATTTGTGGTAATCACTAAGATAATGATGAAATAACTCGTTAGG 1077
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 GAAGGTTAATGATGGTGATTTGTGGTAATCACTGAGATAATGATGAAATAACTCGTTAGG 1197
Query 1078 TTT-AGTAA-TGTAACATTATTTTACTTAATGCTTT 1111
||| || || |||||||||||||||||| ||| |||
Sbjct 1198 TTTTAG-AAGTGTAACATTATTTTACTTTATGATTT 1232
Score = 268 bits (145), Expect = 7e-71
Identities = 205/230 (89%), Gaps = 20/230 (9%)
Strand=Plus/Plus
Query 1104 AATGCTTTTATACTG-TTTT-T-GTG--TTTGAATGAATC-TTGATTTTCACACTCAC-T 1156
||||||||||||||| |||| | ||| |||||||||||| ||||||||||||||||| |
Sbjct 1255 AATGCTTTTATACTGTTTTTGTGGTGAATTTGAATGAATCTTTGATTTTCACACTCACTT 1314
Query 1157 TTTTGTTTATTTCAACACTATTGGGTAATGTTTAAGAGCTTTTAATGTATACTTCGGGAA 1216
||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1315 TTTTGTTTATTTCAACAGTATT-GGTAATGTTTAAGAGCTTTTAATGTACACTTCGGGAA 1373
Query 1217 GTGAAAAAGTTTGAATTCAAa-ttctttagatatttt--cttc-ttttctgcattatttt 1272
||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1374 GTGAAAAAGTTTGAATTCAAAATTCTTTAGATATTTTTTCTTCATTTTCTGCATTATT-- 1431
Query 1273 tatttttaATACCACTAGTGTAATCGGTGTTTCAATAAATGTAAGTGTAC 1322
| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1432 -A-----AATAGTACTAGTATAATCGGTGTTTCAATAAATGTAAGTGTAC 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65059906320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5