BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480607
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 702 0.0
AT3G24506.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 248 4e-65
> AT2G17240.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G24506.1);
Has 2795 Blast hits to 943 proteins in 155 species: Archae
- 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153;
Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).
| chr2:7498130-7499206 FORWARD LENGTH=681
Length=681
Score = 702 bits (380), Expect = 0.0
Identities = 456/490 (93%), Gaps = 16/490 (3%)
Strand=Plus/Plus
Query 1 ATAATTCTTGGTTGGTGGATAATCGATTTAGTTAGCTCCGTCCCGGGGAATCATGGCGTC 60
||||||||||||||||||||||| || | ||||||||||||||| ||| |||||||||
Sbjct 1 ATAATTCTTGGTTGGTGGATAATAGA--T--TTAGCTCCGTCCCGGAGAACCATGGCGTC 56
Query 61 GCTTTGCTCTGCCAAGTTCCTTCCTTCTCCATCGCTCGATGTTCTAGGGTTTCTATCTAC 120
|||||||||||| | |||||||||||||||||||||||| || ||| |||||||
Sbjct 57 GCTTTGCTCTGCGAGGTTCCTTCCTTCTCCATCGCTCGA-----TA---TTT-TATCTAC 107
Query 121 GAAGACGACGATATCCTCCGACTCGCGCTCGCTTGTTTGCTCTTCGTCGCGTGTCTATGG 180
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 108 GAAGACGAAGATATCCTCCGACTCGCGCTCGCTTGGTTGCTCTTCGTCGCGTGTCTTTGC 167
Query 181 TTTCTCTTCCGTTCATCG---TTCTTCGCGTCGCAATCGGAATCCGCTACACGTTGTGTC 237
||||||||||||||| || ||||||||||||||||||||||| ||| || ||||||||
Sbjct 168 TTTCTCTTCCGTTCACCGTTCTTCTTCGCGTCGCAATCGGAATCAGCTGCAAGTTGTGTC 227
Query 238 TATGGCTCCCGAGGAAGAAAAGCTCACTCGTCGCAATCCTCTCGATTTCCCAATTGAGTG 297
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 228 TATGGCTCCTGAGGAAGAAAAGCTCACTCGTCGTAATCCTCTCGATTTCCCAATTGAGTG 287
Query 298 GGAAAGACCTAAACCTGGGAGGAGGCCTGACATTTTCCCCAAGTTTAGCCCTATGAAGAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GGAAAGACCTAAACCTGGGAGGAGGCCTGACATTTTCCCCAAGTTTAGCCCTATGAAGAC 347
Query 358 ACCATTGCCACCGCCGATGCCTTATGATCCTCCTgaagaagatgaagaagaggaagagaa 417
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 348 ACCATTGCCACCACCGATGCCTTATGATCCTCCGGAAGAGGATGAAGAAGAGGAAGAGAA 407
Query 418 gaaagaagaggaagaagaaaacccagaccaagaagaagaggaacaacccgagaagCAGCA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GAAAGAAGAGGAAGAAGAAAACCCAGACCAAGAAGAAGAGGAACAACCCGAGAAGCAGCA 467
Query 478 ATAGAttttt 487
||||||||||
Sbjct 468 ATAGATTTTT 477
Score = 220 bits (119), Expect = 1e-56
Identities = 131/136 (96%), Gaps = 3/136 (2%)
Strand=Plus/Plus
Query 487 ttttttGTTTCAACTTTTGTTGTGTTTTGGAGGAGAAGAAG-A-A-TCAATCTTTTCTCA 543
|||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||
Sbjct 524 TTTTTTGTTTCAACTTTTGTAGTGTTTTGGAGGAGAAGAAGAAGAGTCAATCTTTTCTCA 583
Query 544 CATTTAGTTGCTAGATTTAATCTCATACTCCTGTTCGTGTATTATATCTGTGTAATGCCA 603
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 584 CATTTAGTTGCTAGATTTAATCTCATACTCGTGTTCGTGTATTATATCTGTGTAATGCCA 643
Query 604 CAGTTTCAGAAGCTAT 619
||||||||||||||||
Sbjct 644 CAGTTTCAGAAGCTAT 659
> AT3G24506.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G17240.1);
Has 4864 Blast hits to 709 proteins in 125 species: Archae
- 0; Bacteria - 592; Metazoa - 786; Fungi - 33; Plants - 410;
Viruses - 61; Other Eukaryotes - 2982 (source: NCBI BLink).
| chr3:8928169-8929329 REVERSE LENGTH=695
Length=695
Score = 248 bits (134), Expect = 4e-65
Identities = 212/249 (85%), Gaps = 7/249 (3%)
Strand=Plus/Plus
Query 225 TACACGTTGTGTCTATGGCTCCCGAGGAAGAAAAGCTCACTCGTCGCAATCCTCTCGATT 284
|||| || ||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 239 TACAGGTGGTGGCTATGGCTCCTGAGGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATT 298
Query 285 TCCCAATTGAGTGGGAAAGACCTAAA-CCTGGGAGGAGGCCTGACATTTTCCCCAAGTTT 343
|||| || || ||||| ||||| ||| || |||||||| || || || ||||| ||||||
Sbjct 299 TCCCTATCGAATGGGAGAGACC-AAAGCCAGGGAGGAGACCAGATATATTCCCAAAGTTT 357
Query 344 AGCCCTATGAAGACACCATTGCCACCGCCGATGCCTTATGATCCTCCTgaagaagatgaa 403
|| ||||||||| |||| ||||| || || ||||||||||||||||| |||||||| |||
Sbjct 358 AGTCCTATGAAGTCACCGTTGCCTCCTCCTATGCCTTATGATCCTCCAGAAGAAGAGGAA 417
Query 404 gaagaggaagagaagaaagaagaggaa---gaagaaaacccagaccaag-aagaagagga 459
||||||||||||||||||||||| ||| ||||| |||| || ||| |||| |||||
Sbjct 418 GAAGAGGAAGAGAAGAAAGAAGAAGAAACTGAAGATGACCCTGAA-AAGGAAGACGAGGA 476
Query 460 acaacccga 468
||||||||
Sbjct 477 CCAACCCGA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5