BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480608
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17250.1 | Symbols: EMB2762 | CCAAT-binding factor | chr2:74... 2878 0.0
> AT2G17250.1 | Symbols: EMB2762 | CCAAT-binding factor | chr2:7499477-7503125
FORWARD LENGTH=1998
Length=1998
Score = 2878 bits (1558), Expect = 0.0
Identities = 1801/1915 (94%), Gaps = 30/1915 (2%)
Strand=Plus/Plus
Query 1 CTCTCGGCTAAACCCTTCTTCTTCTTCCACCGTCTCCGCCACGAACCAGAGAAAAACCTC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 35 CTCTCAGCTAAACCCTTCTTCTTCTTCCACCGTCTCCGCCACGAACCAGAG--AAAGCTC 92
Query 61 AACAATGGCGTCAATCCTCTCAAAGAAGCAGAAGAAGAAAGAAAAATACACATTGAAAGA 120
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 93 AACAATGGCGTCAATCCTCTCAAAGAAGCAGAAGAAGAACGAAAAATACACCTTGAAAGA 152
Query 121 GCTCAAATCATTAGGTCATGACTTACTCACTTCTCGATCTCACATCAATAACCTTCCTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GCTCAAATCATTAGGTCATGACTTACTCACTTCTCGATCTCACATCAATAACCTTCCTCT 212
Query 181 CCTTCTCACCTTCGTCTCACCAGAATCTCCGCCGCAGTTCGTCGTCGAAtctctcctctc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 213 CCTTCTCACCTTCGTCTCACCAGAATCTCCGCCGCAGTTCGTCGTTGAATCACTCCTCTC 272
Query 241 actccaatcctttttcactcctcttctctctcagcttccttcgacttcttcatctccttc 300
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 273 ACTCCAATCCTTTTTCACTCCTCTACTCTCTCAGCTTCCTCCGACTTCTTCGTCTCCTTC 332
Query 301 ttcaACCAAACGTCCTCGTTCTGAAGACGATGACCCTGAAGTTGTGTTCAAAGCTTGGCT 360
|||||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 333 TTCAACCAAA---------AC---AGA-G--GACCCTGAAGTTGTGTTCAAAGCTTGGCT 377
Query 361 CAGATCAAAATTCGACGAATTCGTCAAGCTTTTACTAGATGTTCTCGTCTCTCAACAATC 420
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 378 CAGATCAAAATTTGACGAATTCGTCAAGCTTTTACTCGATGTTCTTGTCTCTCAACAATC 437
Query 421 AGAAAATTCTCTAAGGGGAATTGTGATGGGGACATTAATGGAATTTGTAAAGCTTTTGAA 480
|||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 438 AGAAGATTCTCTAAGGGGAATTGTGTTGGGAACATTAATGGAATTTGTAAAGCTTTTGAA 497
Query 481 TGTTGGAAGGTTTCATTCTTCAATCTACCACAGATTACTTCATGCTATTATTCATTCTGA 540
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 498 TGCTGGAAGGTTTCATTCTTCAATCTACCACAGATTACTTGATGCTATTATTCACTCTGA 557
Query 541 AGTTGATATTGAGATATTCTTGGATATACTTACCTCAAAGTACTTCAAGTACATCGATGT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 558 GGTTGATATTGAGATATTCTTGGATATACTTACTTCAAAGTACTTCAAGTACATTGATGT 617
Query 601 TCGCTATTTTACCTACATCAGCATGGAAAAGTTTGTGAAAACATTGGAAGCATCAGTGTC 660
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CCGCTATTTTACATACATCAGCATGGAAAAGTTTGTGAAAACATTGGAAGCATCAGTGTC 677
Query 661 TGCTGATAGGACGGCGGTCGAAAATAGTGAGGCTGAGAATGATTCAAAAGAAAGCCTAGA 720
||||||||| || | | ||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 678 TGCTGATAGAACTGTGATCGAAAATAATGAGGCTGAGAGTGATTCAAAAGAAAGCCTAGA 737
Query 721 ACTCTCTGTTCGCAAGATCTATCAAGTTTTATCTCAAATTCCACCTCCTGAGAAACTAGC 780
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 738 ACTCTCTGTTCGCAAGATCTATCAAGTTTTATCTCAAATCCCACCTCCTGAGAAACAAGC 797
Query 781 TGAAAAGTCTCACCACGAGATGTGGAGTGGGTCAGATGAAAATAGTAGTGAGAAACCGAC 840
||| |||||||| |||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 798 TGAGAAGTCTCAACACGAGATGTGGAGTGGGTCAGATGAAAGTATTAGTGAGAAGCCGAC 857
Query 841 AGATaaaaagaaaaaaaCTGAGGAAGGAGACAGCACTCTCCTTTCTCCGACTACAATTAG 900
|||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 858 AGATAAAAAGAAGAAAACTGAGAAAGGAGACAGCACTCTCCTTTCTCCGGCAACAATTAG 917
Query 901 CAAGAGGATGAAGTTGAAGTTCACTAAAGCATGGATTTCATTTCTCAGACTGCCTCTTCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CAAGAGGATGAAGTTGAAGTTCACTAAAGCATGGATTTCATTTCTCAGACTGCCTCTTCC 977
Query 961 CATTGATGTTTACAAGGAGGTTCTTGCTAGTATTCACCTGACAGTCATTCCCCATCTATC 1020
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 978 CATTGATGTGTACAAGGAGGTTCTTGCCAGTATTCACCTGACAGTCATTCCCCATCTATC 1037
Query 1021 TAATCCTACAATGTTATGCGACTTCTTGACAAAATCATATGACATTGGGGGAGTTGTCAG 1080
|||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||||
Sbjct 1038 TAATCCTACAATGTTATGCGACTTTTTAACAAAATCGTACGACATTGGGGGTGTTGTCAG 1097
Query 1081 TGTGATGGCTCTTAGCAGTCTCTTCATCCTCATGACCCAACATGGTTTGGAGTATCCAAA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGTGATGGCTCTTAGCAGTCTCTTCATCCTCATGACCCAACATGGTTTGGAGTATCCGTT 1157
Query 1141 CTTTTATGAAAAACTGTATGCATTACTGGTTCCTTCTGTCTTTGTGGCAAAGCACCGAGC 1200
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CTTTTATGAAAAACTGTATGCGTTACTGGTTCCTTCTGTCTTTGTGGCAAAGCACCGAGC 1217
Query 1201 AAAATTTCTTCAGCTTCTCGATGCTTGCCTGAAGTCATCAATGCTTCCAGCATATCTGGC 1260
|||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 1218 AAAATTTCTTCAGCTTCTTGACGCATGCCTGAAGTCGTCAATGCTTCCAGCATATCTGGC 1277
Query 1261 AGCTTCATTCACAAAGAAACTAAGCAGATTGTCGCTTTCCATTCCTCCC-GCTGGATCGT 1319
||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 1278 AGCTTCATTCACAAAGAAACTAAGCAGATTGTCACTTTCCATTCC-CCCTGCGGGATCGT 1336
Query 1320 TGGTCATTACGGCTTTGATCTACAACCTTTTACGAAGACATCCTACAATCAACCATCTTG 1379
||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1337 TGGTCATAACAGCTTTGATCTACAACCTTTTACGAAGAAATCCTACAATCAACCATCTTG 1396
Query 1380 TGCAGGAAACCGTTGAAAACACCAATGAAGGCAATACAGAGGCTGGTGAAGACAGTGAGA 1439
||||||||| ||||||||| || |||||| ||| ||||||||||||||| ||| |||||
Sbjct 1397 TGCAGGAAATCGTTGAAAATGCCGATGAAGCCAACACAGAGGCTGGTGAACACAATGAGA 1456
Query 1440 GCCAACCAAAGACCATCAAAAAGCGAAAGCCTGGTATTGACTATTTCAACAACCAGGAGA 1499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1457 GCCAACCAAAGACCATCAAAAAGCGAAAGCTTGGTATTGACTATTTCAACAACCAGGAGA 1516
Query 1500 GTGATCCCAAGAAATCTGGAGCCTTAAAAAGTTCTCTTTGGGAGATCGACACTTTGCGCC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GTGATCCCAAGAAATCTGGAGCCTTAAAAAGTTCTCTTTGGGAGATCGACACTTTGCGCC 1576
Query 1560 ATCATTACTGCCCCCCAGTTTCGA-GGTTTATCTCATCTCTAGAAACTAATCTAACCATC 1618
|||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1577 ATCATTACTGTCCACCAGTTTC-ACGGTTTATCTCATCTCTAGAAACTAATCTAACCATC 1635
Query 1619 AGATCAAAAACCACTGAAATGAAAATTGAAGATTTTAGCTCTGGTTCATATGCCACCATA 1678
||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1636 AGATCGAAAACCACGGAAATGAAAATTGAAGATTTTTGCTCTGGTTCATATGCCACCATA 1695
Query 1679 TTTGGAGACGAGATTCGTAGAAGGGTAAAGCAAGTTCCTTTAGCGTACTACAAAACGGTT 1738
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1696 TTTGGGGACGAGATTCGGAGAAGGGTAAAGCAAGTTCCTTTAGCGTTCTACAAAACGGTT 1755
Query 1739 CCAACATCTCTGTTTGCAGATTCAGATTTTCCGGGGTGGTCATTCACCATTCCACAAGAG 1798
||||||||||||||||| |||||||||||||| |||||| | ||||| ||||||||||||
Sbjct 1756 CCAACATCTCTGTTTGCGGATTCAGATTTTCCTGGGTGGACGTTCACTATTCCACAAGAG 1815
Query 1799 GAAGGCACATGCTGATTTCAAAGAGTAACCAACTCATGAACTaaaaaaaCTGCAGG-T-T 1856
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1816 GAAGGCACATGCTGATTTCTAAGAGTAACCAACTCATGAACTAAAAAAACTGCAGGCTAT 1875
Query 1857 ---A---TTTGTGCTACCAAATTTTGTAGTTTTGATACTGAATGTGTCACA-ACT 1904
| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1876 TCGAAGATTTGTGCTACCAAATTTTGTAGTTTTGATACTGAATGTGTCACATACT 1930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5