BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480610
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17265.1 | Symbols: HSK, DMR1 | homoserine kinase | chr2:750... 1748 0.0
> AT2G17265.1 | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508588-7509755
FORWARD LENGTH=1168
Length=1168
Score = 1748 bits (946), Expect = 0.0
Identities = 1076/1140 (94%), Gaps = 4/1140 (0%)
Strand=Plus/Plus
Query 1 TGTTCTTTAATGGCGAGTCTCTGTTTCCAATCTCCTTCCAAACCCATATCCTATTTCCAT 60
||||| | |||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 10 TGTTCATCAATGGCAAGTCTTTGTTTCCAATCTCCTTCCAAACCCATTTCCTATTTCCAA 69
Query 61 CCTAAATCCAATCCATCGCCGCCGTTATTCTCGAAAGTCTCCGTCTTTCGATGCAGAGCT 120
|| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 70 CCCAAATCCAATCCATCGCCACCGTTATTCGCCAAAGTCTCCGTCTTTCGATGCAGAGCT 129
Query 121 TCTGTACAAACCCTCGTCGCCGTTGAGCCGGAGCCAGTTTTTGTCTCCGTCAAGACTTTT 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 130 TCCGTACAAACCCTCGTCGCCGTTGAGCCGGAGCCAGTTTTCGTCTCCGTCAAGACTTTT 189
Query 181 GCTCCAGCCACCGTCGCTAATTTGGGACCAGGGTTTGATTTCTTAGGATGTGCCGTCGAT 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 GCGCCAGCCACCGTCGCTAATTTGGGACCAGGGTTTGATTTCTTAGGATGTGCCGTCGAT 249
Query 241 GGTCTCGGTGACCATGTGACTCTCCGTGTAGATCCCTCTGTTCGTGCCGGTGAGATTTCA 300
|||||||| |||||||||||||||||||||||||||||||| || ||||||||| | |||
Sbjct 250 GGTCTCGGAGACCATGTGACTCTCCGTGTAGATCCCTCTGTACGAGCCGGTGAGGTCTCA 309
Query 301 ATCTCGGAGATCACCGGAACCACAGCAAAACTCAGCACAAATCCTCTCCGGAACTGCGCC 360
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 310 ATCTCGGAGATCACCGGAACCACAACAAAACTCAGCACGAACCCTCTCCGGAACTGCGCC 369
Query 361 GGAATCGCCGCCATTGCTACGATGAAGATGTTAGGGATTAGATCGGTTGGTTTGTCTTTA 420
|||||||| || |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 370 GGAATCGCTGCTATTGCTACGATGAAGATGTTAGGGATCAGATCGGTTGGTTTATCATTA 429
Query 421 GATTTGCACAAAGG-CTTACCTTTAGGTAGCGGTTTAGGTTCTAGTGCAGCTAGCGCCGC 479
|||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 430 GATTTGCATAAAGGTCTT-CCTTTAGGTAGCGGTTTAGGTTCTAGTGCAGCTAGTGCCGC 488
Query 480 CGCAGCTGCTGTGGCGGTTAATGAGATCTTTGGCCGGAAACTAGGGAATGATGAATTGGT 539
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 489 CGCAGCTGCTGTGGCGGTTAATGAGATCTTTGGCCGGAAATTAGGGAGTGATCAATTGGT 548
Query 540 TTTAGCCGGTTTAGAATCAGAAGCTAAGGTTTCCGGTTATCATGCTGATAATATCGCACC 599
||||||||||||||||| ||||| || || ||||||||||| |||||||||||||||||
Sbjct 549 ATTAGCCGGTTTAGAATCGGAAGCGAAAGTCTCCGGTTATCACGCTGATAATATCGCACC 608
Query 600 AGCGATCATGGGTGGATTCGTTTTGATTCGAAACTACGAACCGCTTGATTTGAAACCATT 659
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 609 AGCGATCATGGGTGGATTCGTTTTGATTAGAAACTACGAACCACTTGATTTGAAACCATT 668
Query 660 GAGGTTCCCATCGGATAAAGATCTCTTCTTTGTTCTAGTGAGCCCTGAGTTTGAAGCTCC 719
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 669 GAGGTTCCCATCTGATAAAGATCTCTTCTTTGTTCTAGTAAGCCCTGACTTTGAAGCTCC 728
Query 720 AACTAAGAAAATGAGAGCTGCATTGCCTACAGAGATTCCAATGGTTCACCATGTTTGGAA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 729 AACTAAGAAAATGAGAGCTGCATTGCCTACAGAGATTCCAATGGTTCATCATGTTTGGAA 788
Query 780 CAGTAGTCAAGCAGCTGCTTTAGTCGCTGCGGTGTTAGAAGGAGACGCGGTAATGCTTGG 839
|||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 789 CAGTAGCCAAGCAGCTGCTTTAGTCGCTGCTGTGTTAGAAGGTGACGCAGTGATGCTTGG 848
Query 840 GAAGGCATTGTCGTCGGATAAGATTGTGGAGCCGACGAGAGCACCGTTGATTCCTGGAAT 899
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 849 GAAGGCATTGTCGTCGGATAAGATTGTGGAGCCGACTAGAGCGCCGTTGATTCCGGGAAT 908
Query 900 GGAAGCTGTGAAGAAGGCGGCTTTAGAAGCTGGAGCGTTTGGATGTACGATTAGCGGAGC 959
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 909 GGAAGCTGTGAAGAAGGCGGCTTTAGAAGCTGGAGCATTTGGATGTACTATTAGCGGAGC 968
Query 960 TGGACCAACAGCGGTTGCGGTGATTGATTCAGAGGAGAAGGGTCAAGTGATTGGAGAGAA 1019
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 969 TGGACCAACAGCGGTTGCGGTGATTGATTCGGAGGAGAAGGGTCAAGTCATTGGAGAGAA 1028
Query 1020 GATGGTGGAAGCGTTTTGGAAAGTTGGACATTTGAAATCTGTTGCTTCTGTGAAGAAGCT 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1029 GATGGTGGAAGCGTTTTGGAAAGTTGGTCATTTGAAATCTGTTGCTTCTGTGAAGAAGCT 1088
Query 1080 TGATAAAGTTGGTGCTAGGCTTGTCAACAGCATCTCCAGGTGATCTTCT-TGTGATGTTT 1138
|||||| |||||||||||||||||||||||| ||||||| ||||||| | |||| |||||
Sbjct 1089 TGATAATGTTGGTGCTAGGCTTGTCAACAGCGTCTCCAGATGATCTT-TGTGTGCTGTTT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5