BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480611
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17270.1 | Symbols: PHT3;3 | phosphate transporter 3;3 | chr... 2370 0.0
> AT2G17270.1 | Symbols: PHT3;3 | phosphate transporter 3;3 | chr2:7510100-7512387
FORWARD LENGTH=1555
Length=1555
Score = 2370 bits (1283), Expect = 0.0
Identities = 1453/1533 (95%), Gaps = 20/1533 (1%)
Strand=Plus/Plus
Query 1 GAAACCTAAATTGAAATTA-CA--ATTTCCCTTAAAGATTCGTTTTTTCCGCCAA-CC-T 55
||||||||||||||||||| || |||| |||||||||||| |||||||||||| || |
Sbjct 11 GAAACCTAAATTGAAATTACCATTTTTTCTCTTAAAGATTCGATTTTTCCGCCAACCCGT 70
Query 56 TCCCGAAAGCTTGGGACTTTATTTGTAGAAAAAGT-AAA-AGAGAGCCTTTGTGTTTATT 113
|||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||||||||
Sbjct 71 TCCCGAAAGCTTGGAACTTTATTTGTTGAAAAAGTAAAAGAGAGAGCC-TTGTGTTTATT 129
Query 114 TCTGAGCCTTGTCTTTGTCCGTGAGACGTGGACGAGCGATCTCCATCAGAAAATGAGAAC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCTGAGCCTTGTCTTTGTCCGTGAGACGTGGACGAGCGATCTCCATCAGAAAATGAGAAC 189
Query 174 CCTT-CCACGT--ACACTCTTTGCCTTTTCTTCTATAGC-TTCCTTGTGACGTGTTTCTT 229
|||| |||||| ||||||||||||||| ||| |||||| |||| |||||||||||||||
Sbjct 190 CCTTCCCACGTACACACTCTTTGCCTTTCCTTTTATAGCTTTCC-TGTGACGTGTTTCTT 248
Query 230 CGTTTCTGGGTTTTGGGTTTACCAGAGAAAAAGCCAAAGAACAACTTTTGTTCTGAGAGA 289
|||||||||||||||||||||| || ||||| | |||||| |||||||||||||||||||
Sbjct 249 CGTTTCTGGGTTTTGGGTTTACTAGCGAAAACGTCAAAGATCAACTTTTGTTCTGAGAGA 308
Query 290 TTACGATTAGGGTTTATCAAGGATTTTGAAACGA-TTTTGGTAAGAAGATGACAAGAGTC 348
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 309 TTACGATTAGGGTTTATCGGGGATTTTGAAACGATTTTTGGTAAGAAGATGACAAGAGTC 368
Query 349 AAGAGTAAACTAGACGATGAATTGTCGTCTCCTTGGTTTTATACTGTTTGCACCATGGGA 408
||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 369 AAGAGTAAACTAGACGAGGAACTGTCGTCTCCTTGGTTTTATACTGTTTGTACCATGGGA 428
Query 409 GGAATACTTAGTGCTGGAACAACCCATTTAGCTATAACTCCTCTTGATGTCCTCAAAGTC 468
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 429 GGAATGCTTAGTGCCGGAACAACCCATTTGGCTATAACTCCTCTTGATGTCCTCAAAGTC 488
Query 469 AATATGCAGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AATATGCAGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTA 548
Query 529 AGAGAGCATGGCCATTCCTATCTTTGGAGAGGTTGGTCAGGGAAGCTTTTAGGTTATGGT 588
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 549 AGAGAGCATGGTCATTCTTATCTTTGGAGAGGTTGGTCAGGGAAGCTATTAGGCTATGGT 608
Query 589 GTTCAAGGTGGATGCAGATTCGGACTCTATGAGTACTTCAAGACACTCTACAGCAATGTG 648
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 609 GTTCAAGGTGGATGCAGATTTGGACTCTATGAGTACTTCAAGACACTCTACAGCGATGTG 668
Query 649 TTACCTAATCATAACAGAACTTCCATATATTTTCTCAGCAGCGCTTCTGCTCAGATATTC 708
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 669 TTACCTAATCATAACAGAACTTCCATATATTTTCTCAGCAGTGCTTCTGCTCAAATATTC 728
Query 709 GCCGATATGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCCATG 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 729 GCCGATATGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCTATG 788
Query 769 TTTGCAAAAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGGC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTTGCAAAAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGGC 848
Query 829 TTCCACAGGGGACTTTTTCCGCTCTGGTGTCGCAATCTTCCATTTTCTATGGTGATGTTC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TTCCACAGGGGACTTTTTCCGCTCTGGTGTCGCAATCTTCCATTTTCTATGGTGATGTTC 908
Query 889 TCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAAATATTATCCAGAAAAGGAAGCAA 948
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 909 TCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAAAGATTATCCAGAAAAGGAAGCAA 968
Query 949 GATTGCTCTAAAGCTCAACAACTTGGTGTCACATGTCTTGCTGGCTATACTGCTGGAGCC 1008
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 969 GATTGCTCTAAAGCTCAACAACTCGGTGTCACATGTCTTGCTGGCTATACTGCTGGAGCC 1028
Query 1009 GTAGGTACAGTCATCTCTAACCCCGCAGATGTGGTTCTTTCATCTCTCTACAATAACAAA 1068
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1029 GTAGGTACAATCATCTCTAACCCCGCAGATGTGGTTCTTTCGTCTCTCTACAACAACAAA 1088
Query 1069 GCCAAGAGTGTGTTGCAGGCTGTGAGGAACATTGGGTTTGTTGGTCTTTTCACCAGAAGT 1128
||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1089 GCCAAGAATGTGTTGCAGGCTGTGAGGAATATTGGGTTTGTTGGTCTATTCACCAGAAGC 1148
Query 1129 CTTCCCGTCCGGATCACGATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTACGAT 1188
||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1149 CTTCCTGTTCGGATCACTATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTATGAT 1208
Query 1189 GCCATCAAAGTCTTAAGCGGATTCCCTACAAGTGGAGGAGTGAAGAAACCAGTGGATGCA 1248
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1209 GCCATCAAAGTCTTAAGCGGATTCCCTACAAGTGGCGGAGTGAAGAAACCAGTGGATGCA 1268
Query 1249 ACTAAATTATCAGTGTGAAGCTTAGAAGAGTAGACCTATATCTATCAACAATAAAACCAG 1308
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1269 GCTAAATTATCAGTGTGAAGCTTAGAAGAGTAGATCTATCTCTATCAACAATAAAACCAG 1328
Query 1309 GAACTCAAAACATACTGTCATGTAAGATTCTCTTGCGAGTAAATACCGAGGCGTTGTGTA 1368
||||||||||||||| ||||| |||||||||||||| |||| |||| |||||||||||||
Sbjct 1329 GAACTCAAAACATACGGTCATATAAGATTCTCTTGCAAGTAGATAC-GAGGCGTTGTGTA 1387
Query 1369 GTGGTTGGAAGGAACATTTTGATCTTTTTTGTTTCATGCGCAAATGCATTT-TCTC-AAC 1426
| | || |||||| | ||||||| |||| ||||||||||||||||||||| ||| |||
Sbjct 1388 GCGATTAGAAGGAGCTTTTTGATATTTTC-GTTTCATGCGCAAATGCATTTGTCTTGAAC 1446
Query 1427 CCCTGCCTAAAATTGGATTGTAAGTAAAGTGCTAATGAGTG-ATATTGCTGTAAACAGAA 1485
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1447 CCCTGCCTGAAATTGGATTGTAAGTAAAGTGCTAATGA-TGGATATTGCTGTAAACAGAA 1505
Query 1486 ACTATGATCTTTAACTGATTGATGTCAAAGGAA 1518
|| ||||||||||||||||||||||||||||||
Sbjct 1506 ACAATGATCTTTAACTGATTGATGTCAAAGGAA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5