BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480613
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17280.1 | Symbols: | Phosphoglycerate mutase family protei... 1319 0.0
> AT2G17280.1 | Symbols: | Phosphoglycerate mutase family protein
| chr2:7513211-7515048 FORWARD LENGTH=1083
Length=1083
Score = 1319 bits (714), Expect = 0.0
Identities = 795/835 (95%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 5 ACGAAAGCATAGGTCTTTACCCTCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 64
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 71 ACGAAGGCATAGGTCTTTACCCGCTTCATCGTTGCAAAACCATTCACCTGGTGAGACATG 130
Query 65 CTCAAGGGATTCATAATGTAGCTGGTGAAAAAGATCACAGTGCTTACTCTTCTGAGGATT 124
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 131 CTCAAGGGATTCATAATGTGGCTGGTGAAAAAGATCACAGTGCTTACTCTTCGGAGGATT 190
Query 125 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTACGGAACCATG 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 191 ACTTTGATGCTCATCTTACCCCTCTTGGTTGGCAACAGGTTGATAATCTAAGGAACCATG 250
Query 185 TTC-TAGCAACTCAACTCTTAAAGAAGGTTGAACTTGTCATTGTTTCACCTTTGCTTAGA 243
||| | ||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 251 TTCGT-GCAGCTCAACTCTTAAACAAGGTTGAACTTGTCATTGTTTCCCCTATGCTTAGA 309
Query 244 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGTGAAGAAGATACTCATGGAGCGGATACA 303
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct 310 ACTATACAAACAGCTGTTGGTGCTTTTGGAGGAGAAGAAGATACTAATGGAGCGGATGCA 369
Query 304 ACACCGTTGATGGTGGCTAATGCTGGGAACAGTGATCGCCCTGCGATTTCAAGCTTAAAT 363
|||||||| ||||||||||||||||||| ||| ||||| ||||||||||| |||||||||
Sbjct 370 ACACCGTTAATGGTGGCTAATGCTGGGAGCAGCGATCGTCCTGCGATTTCTAGCTTAAAT 429
Query 364 AGCCCGCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 423
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AGTCCTCCTTTCCTTGCTGTTGAGCTTTGCAGGGAAACTATGGGTGATCATCCTTGTGAC 489
Query 424 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTTTTTCCCGCAATCGATTTCTCAATTATT 483
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 490 AGGCGAAGAAGCGTCACTGAGTACAAGGCTCTCTTTCCCGCTATTGATTTCTCAATTATT 549
Query 484 GAAACCGACAAGGATGTTTTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 543
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GAAACCGACAATGATGTTCTGTGGAAGCCGAGTCCAAGAGAGAGCCTTGAAGAAGTTGCA 609
Query 544 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCGATT 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 610 GCCAGAGGTGTAGAGTTCATCAAATGGATATGGACAAGGAAAGAGAAGGAGATCGCAATT 669
Query 604 GTATCTCACAGCGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGTGAT 663
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 670 GTATCTCACAGTGGCTTCTTGCACGGTCTCTTGAGTTCTTTCGGGAAGGATTGTTGCGAT 729
Query 664 GACCTAAAGAAAGAGCTGTCTATGCATTTCAGCAACTGTGAGCTGCGCTCAATGGTTATC 723
||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 730 GACCTAAAGAAAGAGTTGTCTATACATTTGAGCAACTGTGAGCTTCGCTCAATGGTTATC 789
Query 724 GTGGATAAAGGGAACCTGGGGACTGATTCTGCAGAGACCACAAACTATCCTGGAAAGCTT 783
|||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 790 GTGGATCGAGGGAACCTGGGGACTGACTCTGCAGAGACCACAAACTATCCTGGGAAGGTT 849
Query 784 CCTCAAGGACTTGATAATCCAAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 838
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 850 CCTGAAGGACTTGATAATCCTAGTGGCTAAATGGCTGAAGAGTAAGAGAGAGAAT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5