BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480615
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17305.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (Inte... 1487 0.0
> AT2G17305.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596),
FBD-like (InterPro:IPR006566); BEST Arabidopsis
thaliana protein match is: F-box family protein (TAIR:AT3G62230.1);
Has 81 Blast hits to 54 proteins in 5 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:7527676-7529210 FORWARD LENGTH=1173
Length=1173
Score = 1487 bits (805), Expect = 0.0
Identities = 937/999 (94%), Gaps = 16/999 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGAACCTGATAGGGTTTTCTTTGTACGTGTTATGCGTGAGTGGGTCTCAAGATTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGTAGAACCTGATAGGGTTTTCTTTGTACGTGTTATGCGTGAGTGGATCTCAAGATTT 60
Query 61 ACTGGTAAAGTTATTGAAAATTTTGAGATTCATCTCTCCCAGCCGATGGGTTTCGCAGGA 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGGTAAAATTATTGAAAATTTTGAGATTCATCTCTCCCAGCCGATGGGTTTCGCAGGA 120
Query 121 GATATAATGTCTCTCACTGAATTCGCCACCTCCCGACAAGTCAAGAACTTAGTTCTTGAT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GATATAATGTCTCTCACTGAATTTGCCACCTCCCGACAAGTCAAGAACTTAGTTCTTGAT 180
Query 181 TTCTCAGATCCTGTCCAAAGAAACTTAAGTCAAGCCCAACAGACTATAAGAGATTGTCTA 240
|||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 181 TTCTCAGATCCTATCCAAAGAAACTTAAGTCAAGCCCAACAGATTATAAGAGATGGTCTA 240
Query 241 CTCAGATGCAGATATCCTCAAAAGAACGATTTAGATGTTTCTCATCTCTTTTTCAATCTT 300
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CTCAGATGCAGATACCCTCAAAAGAACGAATTAGATGTTTCTCATCTCTTTTTCAATCTT 300
Query 301 TTATATGTTAGAACTTTAACGGTCTGCTCCTTTTTCCTTCAGGTCCTCCAAGATTGTGAC 360
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TTATATGTTAGAAATTTAACGGTCTGCTCTTTTTTCCTTCAGGTCCTCCAAGATTGTGAC 360
Query 361 GATCCTATGGCTTTGCACGATTCGATGAAAACTCGACATTTGGTGATGAAAACAAATATG 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATCCTATGGCTTTGCACGTTTCGATGAAAACTCGACATTTGGTGATGAAAACAAATATG 420
Query 421 CATGCAAATGACTTCGTGGGAATTAGTATCTTTCTCAATAGTTGTCCGGAACTTGAATCT 480
|| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 421 CACGCAAATGACTTCGTGGGAATTAGCATATTTCTCAATAGTTGTCCGGAACTGGAATCA 480
Query 481 CTCACGTTTGATTTGGTTACTACTAGTCGTTTCGTGAGAGCTCGATCGCCTTTAGTGATA 540
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTCACGTTTGATTTGGTTACTAGTAGTCGTTTCGTGAGAGCTCCATCGCCTTTAGTGATA 540
Query 541 GATCCAGTAAGTCATTGGCTCACTAGTAAAGCTTACGAGTGCTTGGAAAAAACGCTAAAG 600
||||| ||||| |||||||||||||| ||| |||||||||| |||||||||||||| |||
Sbjct 541 GATCCTGTAAGCCATTGGCTCACTAGCAAATCTTACGAGTGTTTGGAAAAAACGCTTAAG 600
Query 601 GTTGTGAAGGTAA-AGAAATTCCGTGGAAGCTCGAACGAATTACATATGCTTCAATACTT 659
||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 601 GTTGTGAAGATAACA-AAATTTCGTGGAAGCTCGAACGAGTTACATATGCTTCAATACTT 659
Query 660 GATTCGTACCGGGTGTGTGATGGAACGAGTTGACCTTTACGAGGCAAATGGATTGAACCA 719
| |||||||||||||||| |||||||||||||| || ||||||||| | |||||||||||
Sbjct 660 GCTTCGTACCGGGTGTGTTATGGAACGAGTTGATCTATACGAGGCAGAGGGATTGAACCA 719
Query 720 TAATCAAAAGAGGTGGGTACTAGCTGCGGTTGAGGAGGTTCAGCAGAATTTCAAGAGAGC 779
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 TAACCAAAAGAGGTGGGTACTAGCTGGGGTTGAGGAGGTTCAGCAGAATTTCAAGAGAGC 779
Query 780 TTCGAGGCATTTACGAATTACTCTACACAATGCTTGATTCAAGCATCTTCTAGATTTTCT 839
|||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 780 TTCGAGGCATTTACGAATTACTCTACACAATGCTTGATTCAAGCAT-TT-T-------CT 830
Query 840 AGTGAAAAA-TAACTCATTGAATGATCTTTTCAAA-TTTGCTTTATTTCATATTGAGGG- 896
||||||||| ||| ||| ||||||||||||| || ||||||||||||||||| || ||
Sbjct 831 AGTGAAAAAGTAA-TCAATGAATGATCTTTTTGAACTTTGCTTTATTTCATAT-GAAGGA 888
Query 897 TGCGTATGTTTCATTTGGATTAGTTGTTTCAGTTGTTTAAGTTTATTCTTTTCCTATTTG 956
||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 889 TGCGTATGTTTTATTTGGATTGGTTGTTTCAGTTGTTTAAGTCTATTATTTTCCTATTTG 948
Query 957 GCTTTGTAAGAAAAATAATTGATAATTAAGAAATGAAAA 995
|||| |||||| ||| |||||||||||||||||||||||
Sbjct 949 GCTTGGTAAGATAAACAATTGATAATTAAGAAATGAAAA 987
Score = 100 bits (54), Expect = 2e-20
Identities = 61/64 (95%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 996 TTTGGTTTGGTTTTT-AAAATTTAAATATATGTTTGAAAATCAATATTTACAATATGATA 1054
|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TTTGGTTT-GTTTTTAAAAATTTAAATCTATGTTTGAAAATCAATATTTACAATATGATA 1077
Query 1055 TTAA 1058
||||
Sbjct 1078 TTAA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5