BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480616
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17310.1 | Symbols: SON1 | F-box and associated interaction ... 1598 0.0
> AT2G17310.1 | Symbols: SON1 | F-box and associated interaction
domains-containing protein | chr2:7531194-7532412 FORWARD
LENGTH=1219
Length=1219
Score = 1598 bits (865), Expect = 0.0
Identities = 1038/1120 (93%), Gaps = 17/1120 (2%)
Strand=Plus/Plus
Query 32 CTTCCATGGGAGTTGGAGGAAGACATACTCTCTCGTCTTCCACCTCA-ATCTCTCGTTCG 90
||||| |||||||||||||||||||||||||||||||| |||||| | |||||| |||||
Sbjct 25 CTTCCGTGGGAGTTGGAGGAAGACATACTCTCTCGTCTGCCACCT-ATATCTCTTGTTCG 83
Query 91 ATTCAGAACCGTCTCTAAACAATGGAACACTCTTTTCAACGACAAGACTTTCATCAACAA 150
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 84 ATTCAGAACCGTGTCTAAACACTGGAACTCTCTTTTCAACGACAAGACTTTCATCAACAA 143
Query 151 TCATTTGTCTCGCTCCCGTCCCCAGTTCATCCTCCTGA-CAACTTCCAAGATTTATTCCA 209
||| |||||||||||||||||| | ||||| || ||| ||| |||||||||||||||
Sbjct 144 TCACTTGTCTCGCTCCCGTCCCGAATTCATTATCTTGACCAA-TTCCAAGATTTATTCGG 202
Query 210 TAGACATCATCGATCACATCAACATCGATCCAACGATAAGGTTGCATGAGATACCCACCT 269
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TAGACATCATCGATCACAACAACATCGATCCAACGATAAGGTTGCATGAGATACCCACCT 262
Query 270 ATGATATTCGTAGCCGGGGTACAGATTTGAATCGCACAATTATACGTACTTGCGATGAGT 329
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 263 ATGATATTCATAGCCGGGGTACAGATTTGAATCGCACAATTATAAATACTTGCGATGAGT 322
Query 330 TCTTGTTTTATAACTATCGGCATTGGGATAACAAGACAGCTCTCTGGAGTCCATGGTTGA 389
|||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||
Sbjct 323 TCTTGTTTTATAACTATCGGTATTGGGACAACATGACAGCTCTCTGGAATCCATGGTTGA 382
Query 390 GACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCTGTGTTTTCGGCTTAGGGTACG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GACAGGTTAGATGGATCGAGTACGCGAATCAAGAGTTCTGTGTTTTCGGCTTAGGGTACG 442
Query 450 ATAATAGTAGACCCGAAAAGGTATACAAGATCTTGGGCCATATGTTTTGTCACGGTAAAG 509
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 443 ATAATAGTAGACCCGAAAAGGTTTACAAGATCTTGGGCCATTTGTTTTGTCACGGTAAAG 502
Query 510 TCTTGAGAGATCAGAAAGTTGCGATCTACGAGTGTGCGGCTGACTCGTTGAGGTTTATTG 569
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 503 TCTTGAGAGATCAGAAAGTTGTGATCTACGAGTGTGCGTCTGACTCGTTGAGGTTTATTG 562
Query 570 ATAGACCTGAGGATGACGACTGGCCCATAACTGAAGCAGCTAAACGATCAAATGTGTCCT 629
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 563 ATAGACCTGAGGATGACGACTGGCCCATAACTGAAACAGCTAAACGATCAAATGTGTCAT 622
Query 630 TGAATGGAAATATGTATTGGCTTGCTTGTAGTAATTATAAGACTCATGACTACTACATCC 689
| ||||||||| | |||||| ||| ||||||||||||| ||| | |||| ||||||||||
Sbjct 623 TAAATGGAAATCTCTATTGGTTTGGTTGTAGTAATTATGAGAATGATGAGTACTACATCC 682
Query 690 GAATCTTTGATTTCTCGACGGAGAATTTCAAACCTTTCTGTCTCCTTCCGTGTAAAAAGA 749
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| ||
Sbjct 683 GAATCTTTGATTTCTCGACGGAGGATTTCAAACCTTTTTGTCTCCTTCCGTGTCAAATGA 742
Query 750 ACCATGGTATTGATGGACTTATCCTCGCGGTTTATAAGGAAGATCGGTTTTCGTTGTTAA 809
|||| ||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 743 GCCATAGTACTGATGAACTTGTCCTCGCGGTTTATAAGGGAGATCGGTTTTCGTTGTTAA 802
Query 810 AGCAATGCAGTGTAACGAGGGAGATTGGGATATGGGTAACCAAGGAGAGGATTAGTAAT- 868
|||||||||||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct 803 AGCAATGCAGTGTAACAAGGGAGATTGGGGTATGGGTAACGAAAGAGAGGATTAGTAATG 862
Query 869 ATCAATGGGAACGGTGGGGAGGGCGTGGAGTGGATAAAGTTGATGACCTTGTCAACAAC- 927
| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 863 A-CAATGGGAACGGTGGAGAGGGCGTGGAGTGGTTAAAGTTGATGACCTTGTCAA-AACC 920
Query 928 TAACTTGCCTAAGCTATTTGGTAAGTCTTATCCCAATAGTTACTTCATCTATGAGAAGAC 987
||||||||| ||| ||||||||| | ||| ||||||||||||||| ||||||
Sbjct 921 TAACTTGCCAAAGTTATTTGGTACGG-TTA--------GTTACTTCATCTATGGGAAGAC 971
Query 988 ATTATACATGTGTGATGGCGACGAAGAAACTGCATTGGCTTGCATCTATATTGTGAGGGA 1047
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 972 CTTATACATGTGTAATGGCGACGATGAAACTGCATTGGCTTGCATCTATATTGTGAGGGA 1031
Query 1048 AGATCTGTGCAAGAAGATTCAAATAGGTTCTGGAAATATTAACTGTCGTCACTGTGTTTA 1107
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 AGATGTGTGCAAGAAGTTTCAAATAGGTTCTGGAAATATTAACTGTCGTCACTGTGTTTA 1091
Query 1108 TACTCCCAATTTGCTCTCGCTTCCTTTATTTATTGGTTAG 1147
||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1092 TACACCCAATTTGCTCTCGCTTCCTTTATTTATAGGTTAG 1131
Score = 93.5 bits (50), Expect = 4e-18
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1148 CTCTTTTCGTCTCCTTAAGCATTTTCTTCATTG-TTTACTCGCCTATGGACTTTTATGTA 1206
||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||
Sbjct 1155 CTCTTTTCGTCTCCTTAAGCATTTTCTTC-TTCATTTACTCGCCTATGGACTATAATGTA 1213
Query 1207 ATATCG 1212
||||||
Sbjct 1214 ATATCG 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5