BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480621
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl... 3018 0.0
AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglu... 516 4e-145
> AT2G17370.1 | Symbols: HMG2, HMGR2 | 3-hydroxy-3-methylglutaryl-CoA
reductase 2 | chr2:7549775-7552201 FORWARD LENGTH=2141
Length=2141
Score = 3018 bits (1634), Expect = 0.0
Identities = 1968/2121 (93%), Gaps = 55/2121 (3%)
Strand=Plus/Plus
Query 1 AAGAAGTAGTTAGATTGTGAC-G-GGAGACAAAATCATC-T-TC---TC-TGTTC-T-T- 49
|||||| |||||||||||||| | ||||||||||||||| | || || | ||| | |
Sbjct 3 AAGAAGCAGTTAGATTGTGACGGAGGAGACAAAATCATCATCTCTGTTCTTCTTCTTCTC 62
Query 50 CT-TCT---AT--GATGATGACCCAACATCATTGACGTTGATTTCGATGTCACCAC-CAT 102
|| ||| || ||||||||||||||| | ||||||||||||||||||||| ||| ||
Sbjct 63 CTCTCTCACATACGATGATGACCCAACAACCTTGACGTTGATTTCGATGTCA-CACACAA 121
Query 103 CACTATAAATATACACTCTTCACCTATTTTTGTC-TCT--CA-----GACTTTGGAGCCC 154
||||||||||| |||||||||||||||||||||| ||| || |||||||||||||
Sbjct 122 CACTATAAATA-ACACTCTTCACCTATTTTTGTCATCTCACACTTTGGACTTTGGAGCCC 180
Query 155 AAAA-AACTCTCACAACCATTaaaaa-aaaT-TCCTCCTTCTCGCCGGCGTCAATGGAGG 211
|||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 181 AAAATAA-TCTCATAACCATTAAAAACAAATCTCCTCCTTCTCTCCGGCGTCAATGGAGG 239
Query 212 ATCTCCGTCGTAGACTTCCGACCAAAAAGAACGATGACGACGAAGAAATCTCCAATGTCA 271
|||||||||||||| ||||||| ||||||||| | || ||||||||||| ||||||
Sbjct 240 ATCTCCGTCGTAGATTTCCGACTAAAAAGAAC---G--GA-GAAGAAATCTCTAATGTCG 293
Query 272 CCGTCGCTCTTCCTCCTCGTAAAGCCTCTGACGCGCTTCCTCTTCCGTTATACCTAACCA 331
|||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CCGTCGATCCTCCTCTTCGTAAAGCCTCTGACGCGCTTCCTCTTCCGTTATACCTAACCA 353
Query 332 ACACTTTCTTCCTCGCGCTCTTCTTCGCTACTGTTTATTTTCTTCTTAGCCGATGGCGTG 391
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ACACTTTTTTCCTCTCGCTCTTCTTCGCTACTGTTTATTTTCTTCTTAGCCGATGGCGTG 413
Query 392 AGAAGATCCGTAACTCGACGCCTCTTCACGTCGTTGATC-TAAGTGAGATCTGCT-CTCT 449
||||||||||||||||||||||||||||||||||||| | || ||||||||| | ||||
Sbjct 414 AGAAGATCCGTAACTCGACGCCTCTTCACGTCGTTGA-CTTATCTGAGATCTG-TGCTCT 471
Query 450 CATCGGTTTCGTTGCTTCTTTTATCTATCTCCTTGGTTTCTGCGGTATCGATTTCATTTT 509
||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |||||||
Sbjct 472 AATCGGTTTCGTTGCTTCGTTTATCTACCTCCTTGGTTTCTGTGGTATTGATCTCATTTT 531
Query 510 CCGATCTTCTTCCGATGATGATGTTTGGGTTAACGATGGGATGATTCCATGTGGTCAATC 569
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 532 CCGATCTTCTTCCGATGATGATGTTTGGGTTAACGATGGGATGATTCCATGTAATCAATC 591
Query 570 ACTAGATTGTCGAGAGATTCTTCCGATTAAACCTAATTCCGTCGATCCTCCTCGGGTTTC 629
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 592 CCTAGATTGTCGTGAGGTTCTTCCGATTAAACCTAATTCCGTCGATCCTCCTCGGGAATC 651
Query 630 GGATCTTGATTCGGTGGAAGATGAAGAAATCGTTAAATCGGTGATCGACGGAACTATCCC 689
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 652 GGAGCTTGATTCGGTGGAAGATGAAGAAATCGTTAAATTAGTGATCGACGGAACCATCCC 711
Query 690 TTCGTACACATTGGAGACGAAACTTGGAGATTGCAAACGAGCAGCAGCGATTAGAAGAGA 749
||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 712 TTCGTACTCATTGGAGACGAAACTCGGAGATTGTAAAAGAGCAGCAGCGATTAGAAGAGA 771
Query 750 AGCGGTTCAGAGGATAACCGGTAAATCCTTAACCGGTCTTCCATTGGAAGGTTTTGATTA 809
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 772 AGCGGTTCAGAGGATAACCGGTAAATCCTTAACCGGTCTTCCATTGGAAGGTTTCGATTA 831
Query 810 CAATTCAATCTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGG 869
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CAATTCAATTTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGG 891
Query 870 GATTGCTGGACCTTTGTTACTCGATGGGATTGAGTATTCAGTGCCAATGGCTACAACAGA 929
|||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 892 GATTGCAGGACCTTTGTTGCTTGATGGGGTTGAGTATTCAGTGCCAATGGCTACAACAGA 951
Query 930 AGGTTGTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATTCACTTGTCTGGTGGTGC 989
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 952 AGGTTGTTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATACACTTGTCTGGTGGTGC 1011
Query 990 TTTTAGTGTTCTTATGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGC 1049
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTTTAGTGTTCTTGTGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGC 1071
Query 1050 AAGAAGAGCTGCTCTTGTCATGTTTTATCTTCAAGATCCTGCTAATTTCGAGAGATTGTC 1109
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1072 AAGAAGAGCTGCTCTTGTCATGTTTTATCTTCAAGATCCTTCTAATTTCGAGAGATTGTC 1131
Query 1110 TCTCATTTTCAATAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGTAAGATTGC 1169
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1132 TCTCATTTTCAACAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGCACGATTGC 1191
Query 1170 TGGAAGGAATCTCTATCCGAGGTTTGCGTGTAGTACTGGTGATGCTATGGGGATGAATAT 1229
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1192 TGGGAGGAATCTGTATCCGAGGTTTGCGTGTAGTACTGGTGATGCTATGGGGATGAACAT 1251
Query 1230 GGTCTCCAAAGGTGTTCAGAATGTCTTGGATTTTGTAAAGAGCGAGTTTCCTGACATGGA 1289
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1252 GGTCTCAAAAGGTGTTCAGAATGTCTTGGACTTTGTAAAGAGCGAGTTTCCTGACATGGA 1311
Query 1290 TGTTATTGGCATCTCTTGGAATTACTGTTCGGACAAGAAGGCTTCGGCTGTAAACTGGAT 1349
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGTTATTGGCATCTCTGGGAACTACTGTTCGGACAAGAAGGCTTCGGCTGTAAACTGGAT 1371
Query 1350 CGAAGGACGTGGTAAGCATATTGTATGTGAAGCCTTTATTAAGGCTGAGATTGTGGAGAA 1409
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1372 CGAAGGACGTGGTAAGCATGTTGTATGTGAAGCTTTTATTAAGGCTGAGATTGTGGAGAA 1431
Query 1410 AGTGTTGAAGACTAGCGTTGAGGCTCTTGTAGAGCTTAACACGCTCAAGAACCTTGCTGG 1469
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1432 AGTGTTGAAGACTAGCGTTGAGGCTCTTGTAGAGCTTAACACGCTCAAGAATCTTGTTGG 1491
Query 1470 TTCAGCCATGGCGGGTTCTCTTGGAGGGTTCAATGCTCATGCAAGCAATATTGTCAGTGC 1529
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 1492 TTCAGCCATGGCGGGTTCTCTTGGTGGGTTCAATGCTCATTCAAGCAATATTGTCAGCGC 1551
Query 1530 TGTTTTCATCGCCACTGGGCAAGACCCTGCTCAAAACGTGGAGAGCTCACACTGTATCAC 1589
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1552 TGTGTTCATCGCCACTGGCCAAGACCCAGCTCAAAACGTGGAGAGCTCACACTGTATGAC 1611
Query 1590 CCTGATTGAAGCTGAAGGCAACGACCTTCATATCTCTGTATCAATGCCTTGCATTGAGGT 1649
| ||||| | || || |||||||||| |||||||| ||||||||||||||||||||
Sbjct 1612 CATGATTCTTCCCGATGGTGACGACCTTCACATCTCTGTTTCAATGCCTTGCATTGAGGT 1671
Query 1650 TGGTACTGTTGGAGGTGGTACACAACTTGCATCACAATCAGCTTGTTTGAATCTGCTCGG 1709
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1672 TGGTACTGTTGGAGGTGGGACACAACTTGCATCACAAGCAGCTTGTTTGAATCTACTCGG 1731
Query 1710 TGTGAAAGGATCAAACAACGAGGAACCTGGATCGAACGCACAGCAACTGGCAAGAATCGT 1769
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 1732 TGTGAAAGGATCAAACAACGAGAAACCTGGCTCGAACGCACAGCAATTGGCAAGAATAGT 1791
Query 1770 GGCTGGTTCGGTTCTTGCAGGAGAGCTTTCACTAATGTCTGCTATTGCAGCTGGACAGCT 1829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GGCTGGTTCGGTTCTTGCAGGAGAGCTTTCACTAATGTCTGCTATTGCAGCTGGACAGCT 1851
Query 1830 TGTGAAGAGCCACATGAAATACAACAGATCCAGCAGAGACATTGGCCCTTCGTCTCAAGT 1889
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TGTGAAGAGTCACATGAAATACAACAGATCCAGCAGAGACATTGGCCCTTCGTCTCAAGT 1911
Query 1890 CAACAGATGATGGTTGGAGCACGACGAGACGGaaaataataaaacaaaacaaaaacccaa 1949
|||||| ||||| ||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 1912 CAACAGGTGATGTTTGGAGCACGATGAGACGGATAATAATAAAACAA--CAAAAACCCAT 1969
Query 1950 aaTTAGATTTGATGTAattttaacttcattttatttcttctttatcgatctcttttct-- 2007
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct 1970 AATTAGATTTGATGTAATTCTAACTTCATTTGATTTCTTCTTCATCGATCTCTTTTCTTT 2029
Query 2008 -ct--ctattttgtactctttaAGTCTCCAAATTATCTTAATTTATGTAAAGTCATTTTT 2064
|| |||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 2030 TCTATCTATTTTGTACT----AAGTCTCCAAATTTTCTTAATTTATGTAAAGTC-TTTT- 2083
Query 2065 GTCCTTCCATATTTATGGCTT 2085
|||||||||| ||||||||||
Sbjct 2084 GTCCTTCCATCTTTATGGCTT 2104
> AT1G76490.1 | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl
CoA reductase 1 | chr1:28695760-28698793 FORWARD LENGTH=2557
Length=2557
Score = 516 bits (279), Expect = 4e-145
Identities = 956/1273 (75%), Gaps = 86/1273 (7%)
Strand=Plus/Plus
Query 645 GGAAGATGAAGAAATCGTTAAATCGGTGATCGACGGAACTATCCCTTCGTACAC-ATTGG 703
|||||| || || || || |||||||| ||||||||| ||| || |||||| | || |
Sbjct 701 GGAAGACGAGGAGATTGTGAAATCGGTTATCGACGGAGTTATTCCATCGTACTCGCTT-G 759
Query 704 AGA-CGAAACTTGGAGATTGCAAACGAGCAGCAG-CGATTAGAAGAGAAGCGGTT-CAGA 760
| | | || || ||||||||| |||| || | ||||| | | || || ||| ||||
Sbjct 760 A-ATCTCGTCTCGGTGATTGCAAAAGAGCGGC-GTCGATTCGTCGTGAGGC-GTTGCAGA 816
Query 761 GGA-TAACCGGTAAATC-CTT-AACCGGTCTTCCATTGGAAGGTTTTGATTA-CAATTCA 816
|| | ||||| | ||| || || ||| | || ||||| || |||||||| || ||
Sbjct 817 -GAGTCACCGGGAGATCGATTGAA-GGGT-TACCGTTGGATGGATTTGATTATGAA-TCG 872
Query 817 ATCTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGGGATTGCT 876
|| ||||||||||||||||||||||| ||||| || ||||||| || || |||||||||
Sbjct 873 ATTTTGGGGCAATGCTGTGAGATGCCTGTTGGATACATTCAGATTCCTGTTGGGATTGCT 932
Query 877 GGACCTTTGTTACTCGATGGGAT-TGAGTATTCAGTGCCAATGGCTACAACAGAAGGTTG 935
|| || ||||| || ||| || | |||||| || || || ||||||||||| ||||||||
Sbjct 933 GGTCCATTGTTGCTTGAT-GGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTG 991
Query 936 TTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTATTCACT-TGTCTGGTGGTGCTTTTA 994
|||||||||||| || || ||||| | || |||| | | | |||||||| || |
Sbjct 992 TTTGGTTGCTAGCACTAACAGAGGCTGCAAGGCTA-TGTTTATCTCTGGTGGCGCCACCA 1050
Query 995 GTGTTC-TTATGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGCAAGA 1053
|| | || | || || | ||||| |||| || |||||| | ||| |||| || |||
Sbjct 1051 GT-ACCGTTCTTAAGGACGGTATGACCCGAGCACCTGTTGTTCGGTTCGCTTCGGCGAGA 1109
Query 1054 AGAGCTGCTC-TTG-TCATGTTTTATCTTCAAG-ATCCTGCTAA-TTTCGAGAGATTGTC 1109
||||| || | | | ||||| |||| || |||| | || ||| || | ||| |
Sbjct 1110 CGAGCT--TCGGAGCTTAAGTTTT-TCTTGGAGAATCCAGAGAACTTT-GATACTTTGGC 1165
Query 1110 TCTCA-TTTTCAATAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGTA-AGATT 1167
| | | ||||| | |||||||||||||| || || || ||| ||| ||| | | ||
Sbjct 1166 AGT-AGTCTTCAACAGGTCGAGTAGATTTGCAAGACTGCAAAGTGTTAAATGCACA-ATC 1223
Query 1168 GC-TGGAAGGAAT-CTCTATCCGAGGTT-TGCGTGTAGTACTGGTGATGCTATGGGGATG 1224
|| |||| |||| || ||| ||||| || |||||||||||||||||||||||||||
Sbjct 1224 GCGGGGAA-GAATGCT-TATGTAAGGTTCTG-TTGTAGTACTGGTGATGCTATGGGGATG 1280
Query 1225 AATATGGTCTCCAAAGGTGTTCAGAATGT-CTTGGATTTTGTAAA-GAGCGAGTTTCC-T 1281
|||||||| || |||||||| |||||||| |||| | | | | | || || ||||| |
Sbjct 1281 AATATGGTTTCTAAAGGTGTGCAGAATGTTCTTG-AGTATCTTACCGAT-GA-TTTCCCT 1337
Query 1282 GACATGGATGTTATTGGCATCTCTTGG-AA-TTACTGTTCGGACAAGAAGGCTTCGGCTG 1339
||||||||||| ||||| |||||| || || || ||||||||||||||| || | ||||
Sbjct 1338 GACATGGATGTGATTGGAATCTCT-GGTAACTT-CTGTTCGGACAAGAAACCTGCTGCTG 1395
Query 1340 TAAACTGGATCGAAGGACGTGGTAAG-CATATTGTATGTGAAGCCTTTATT-A-AGGCTG 1396
| |||||||| || ||||||||||| || |||| || || || | || | | ||| |
Sbjct 1396 TGAACTGGATTGAGGGACGTGGTAAATCAG-TTGTTTGCGAGGC-TGTAATCAGAGGA-G 1452
Query 1397 AGATTGTGGAGAAAGTGTTGAAGACTAGCGTTGAGGCTCTT-GTAGAGCTTAACACGCTC 1455
|||| ||| | || || ||||| || ||||| | ||| || || ||||| |||| ||||
Sbjct 1453 AGATCGTGAACAAGGTCTTGAAAACGAGCGTGGCTGCT-TTAGTCGAGCTCAACATGCTC 1511
Query 1456 AAGAACCTTGCTGGTTCAGCCATGGCGGGTTCTCTTGGAGGGTTCAATGCTCATGCAAGC 1515
|||||||| ||||| || || | || || ||||| || || ||||| |||||||| ||
Sbjct 1512 AAGAACCTAGCTGGCTCTGCTGTTGCAGGCTCTCTAGGTGGATTCAACGCTCATGCCAGT 1571
Query 1516 AATAT--TGTCAGTGCTGTTTTCATCGCCACTGGGCAAGACCCTGCTCAAAACGTGGAGA 1573
|| || |||| |||||| ||||| || ||||| ||||| || ||||||||||||||||
Sbjct 1572 AACATAGTGTC--TGCTGTATTCATAGCTACTGGCCAAGATCCAGCTCAAAACGTGGAGA 1629
Query 1574 GCTCACACTGTATCACCCTGATTGAAGCTG--AA-G--G-CAACGACCTTCATATCTCTG 1627
| || || || |||||| |||| |||||| || | | ||| || | |||||||| |
Sbjct 1630 GTTCTCAATGCATCACCATGATGGAAGCTATTAATGACGGCAAAGATATCCATATCTCAG 1689
Query 1628 T-ATCAATGCCTTGC-ATTGAGGTTGGTACTGTTGGAGGTGGTACACAACTTGCATCACA 1685
| | | ||||| | | || ||||| || || || ||||| || ||||| |||||||| ||
Sbjct 1690 TCA-CTATGCCAT-CTATCGAGGTGGGGACAGTGGGAGGAGGAACACAGCTTGCATCTCA 1747
Query 1686 ATCAGCTTGTTTGAATCTGCTCGGTGTGAAAGGATCAAACA-ACGAGGAACCTGGA-TCG 1743
|||||| ||||| || |||||||| || |||||| ||| || | ||| || ||| | |
Sbjct 1748 ATCAGCGTGTTTAAACCTGCTCGGAGTTAAAGGAGCAAGCACA-GAGTCGCCGGGAAT-G 1805
Query 1744 AACGCACAGCAA-CTGGCAA-GAATCGTGGCTGGTTCGGTTCTT-GCAGGAGAGCTT-TC 1799
|||||| || | || || | || |||| || || | ||| || || |||||| || ||
Sbjct 1806 AACGCA-AGGAGGCTAGCGACGA-TCGTAGCCGGAGCAGTT-TTAGCTGGAGAG-TTATC 1861
Query 1800 ACTAATGTCTGCTATTGCAGCTGGACAGCTTGTGAAGA-GCCACATGAAATACAACAGAT 1858
||||||| || |||||||||||||||||||||| || | |||||||||||||| ||||
Sbjct 1862 TTTAATGTCAGCAATTGCAGCTGGACAGCTTGTGA-GAAGTCACATGAAATACAATAGAT 1920
Query 1859 CCAGCAGAGACAT 1871
||||| |||||||
Sbjct 1921 CCAGCCGAGACAT 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5