BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480622
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17380.1 | Symbols: AP19 | associated protein 19 | chr2:7553... 907 0.0
AT4G35410.2 | Symbols: | Clathrin adaptor complex small chain ... 569 9e-162
> AT2G17380.1 | Symbols: AP19 | associated protein 19 | chr2:7553002-7555045
FORWARD LENGTH=764
Length=764
Score = 907 bits (491), Expect = 0.0
Identities = 585/627 (93%), Gaps = 19/627 (3%)
Strand=Plus/Plus
Query 1 ACAGAAGGATTCTTTCGACGATCATCAGCTTCTGGAGATCTCTTCTGGGAATCGAGCTT- 59
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 ACAGAAGAATACTTTCCACGATCATCAGCTTCTGGAGATCTCTTCTGGGAATCGAGCTTC 88
Query 60 -C-GCT---G-------TTCAATCGGCTAAAAATGATACATTTCGTGCTACTAGTTAGTC 107
| | | | |||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 89 ACTGTTAAAGATTTTCCTTCAATCGGCTAAAAATGATACATTTCGTGTTACTAGTCAGTC 148
Query 108 GACAAGGGAAAGTAAGGCTCACCAAGTGGTATTCGCCTTATACACAGAAGGAAAGATCTA 167
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 149 GACAAGGGAAAGTAAGGCTCACCAAGTGGTATTCGCCGTATACGCAGAAGGAAAGATCTA 208
Query 168 AGGTCATACGCGAACTCAGCGGCGTGATTCTGAACCGAGGTCCCAAGCTCTGCAATTTTA 227
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 209 AGGTCATACGTGAACTCAGTGGAGTGATTCTGAACCGAGGTCCCAAGCTCTGCAATTTTA 268
Query 228 TTGAATGGAGAGGATACAAGGTTGTCTACAAAAGATATGCAAGCTTGTATTTCTGCATGT 287
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 269 TTGAATGGAGAGGATACAAGGTTGTCTACAAAAGATATGCAAGCTTGTACTTCTGCATGT 328
Query 288 GCATTGATGAGGCGGATAACGAGCTAGAGGTACTGGAGATAATTCATCACTACGTCGAGA 347
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 329 GCATTGATGAGGCGGATAACGAGTTAGAGGTACTGGAGATAATTCATCACTACGTCGAGA 388
Query 348 TACTTGACCGTTACTTTGGCAGTGTGTGTGAACTCGATTTGATTTTTAACTTCCACAAGG 407
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 TTCTTGACCGCTACTTTGGCAGTGTGTGTGAACTCGATTTGATTTTTAACTTCCACAAGG 448
Query 408 CGTATTATATACTCGATGAGCTGTTGATCGCTGGTGAACTTCAAGAGTCGAGCAAGAAAA 467
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 449 CGTATTATATACTCGATGAGCTGTTGATCGCCGGAGAACTTCAAGAGTCAAGCAAGAAAA 508
Query 468 CAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTGGAAGCTGCGAAAGAGGAGGCGA 527
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 509 CAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTGGAAGTTGCGAAAGAGGAGGCGA 568
Query 528 GTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAGAGTCTCTTT-CTGATCTTTACT 586
|||||||||||||||||||||||||||||||||||||| || |||| |||| |||| ||
Sbjct 569 GTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAG--TC-CTTTTCTGAACTTTTCT 625
Query 587 TACGCA-CTTAAAACAATCGTAAATGA 612
|| ||| || ||| |||||||||||||
Sbjct 626 TATGCAGCTGAAA-CAATCGTAAATGA 651
> AT4G35410.2 | Symbols: | Clathrin adaptor complex small chain
family protein | chr4:16832481-16834002 FORWARD LENGTH=786
Length=786
Score = 569 bits (308), Expect = 9e-162
Identities = 424/481 (88%), Gaps = 4/481 (1%)
Strand=Plus/Plus
Query 80 ATGATACATTTCGTGCTACTAGTTAGTCGACAAGGGAAA-GTAAGGCTCACCAAGTGGTA 138
||||||||||| ||||| |||||||| || ||| ||||| |||||||||||||| |||||
Sbjct 92 ATGATACATTTTGTGCTTCTAGTTAGCCGGCAA-GGAAAGGTAAGGCTCACCAAATGGTA 150
Query 139 TTCGCCTTATACACAGAAGGAAAGATCTAAGGTCATACGCGAACTCAGCGGCGTGATTCT 198
||| |||||| |||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 151 TTCTCCTTATGCACAGAAGGAAAGATCTAAGGTTATACGTGAACTCAGTGGAGTGATTCT 210
Query 199 GAACCGAGGTCCCAAGCTCTGCAATTTTATTGAATGGAGAGGATACAAGGTTGTCTACAA 258
||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 211 GAATCGAGGTCCAAAGCTCTGCAATTTTGTTGAATGGAGAGGATACAAAGTTGTTTACAA 270
Query 259 AAGATATGCAAGCT-TGTATTTCTGCATGTGCATTGATGAGGCGGATAACGAGCTAGAGG 317
|||||||||||| | | || |||||||||||||||||| ||| |||||||||| ||||||
Sbjct 271 AAGATATGCAAG-TCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGG 329
Query 318 TACTGGAGATAATTCATCACTACGTCGAGATACTTGACCGTTACTTTGGCAGTGTGTGTG 377
| || ||||| ||||||||||| || ||||| || || || || ||||| ||||||||||
Sbjct 330 TCCTTGAGATCATTCATCACTATGTTGAGATTCTCGATCGCTATTTTGGAAGTGTGTGTG 389
Query 378 AACTCGATTTGATTTTTAACTTCCACAAGGCGTATTATATACTCGATGAGCTGTTGATCG 437
||||||||||||||||||||||||||||||| ||||| ||| | |||||||| ||||| |
Sbjct 390 AACTCGATTTGATTTTTAACTTCCACAAGGCATATTACATATTGGATGAGCTCTTGATTG 449
Query 438 CTGGTGAACTTCAAGAGTCGAGCAAGAAAACAGTTGCAAGGATAATATCAGCCCAGGATC 497
|||| || ||||||||||| |||||||||||||| || ||||| ||||| || |||||||
Sbjct 450 CTGGGGAGCTTCAAGAGTCAAGCAAGAAAACAGTAGCCAGGATTATATCCGCTCAGGATC 509
Query 498 AATTGGTGGAAGCTGCGAAAGAGGAGGCGAGTTCCATAAGTAATATAATTGCTCAGGCTA 557
|| ||||||| | ||| ||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 510 AACTGGTGGAGGTTGCAAAAGAGGAGGCCAGTTCGATAAGTAATATAATCGCTCAGGCTA 569
Query 558 C 558
|
Sbjct 570 C 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5