BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480624
Length=2772
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17410.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 3893 0.0
> AT2G17410.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr2:7558998-7563752 FORWARD LENGTH=2819
Length=2819
Score = 3893 bits (2108), Expect = 0.0
Identities = 2538/2741 (93%), Gaps = 47/2741 (2%)
Strand=Plus/Plus
Query 42 CGTCGTCTCCTTTTCCActtcttcttcttc-ttcttcACCAAGTTTGT-ATAGGAATGCT 99
|||||||||| | || ||| |||||||||| || ||| | ||| | | |||||||||
Sbjct 105 CGTCGTCTCCCTATCTACTGCTTCTTCTTCGTT-TTCGTCTTCTTTATCA-AGGAATGCT 162
Query 100 GTTTAAATGGAATCAACAATTGAGAATTTGACGGAAATGGAATCAACGATGGAGAATTTA 159
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 163 GTTTAATTGGAATCAACAATGGAGAATTTGACGGAAATAGAATCAACGATGGAGAGTTTA 222
Query 160 ACGGAAATGGAGAGTGAGAGAGTTGAACAGGGCACTGATCAGGAATTTGAAAGTGGAGAG 219
|||||||||||||||||||||||||||||||| || ||| ||||| ||| ||||||||||
Sbjct 223 ACGGAAATGGAGAGTGAGAGAGTTGAACAGGGTACCGATAAGGAAATTGGAAGTGGAGAG 282
Query 220 CAAAGGCAGGATGATGTAAAGGAAACGGAGAATGAGAGTCCAGGAGAGACAGTAGGAGAG 279
|||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||
Sbjct 283 AAAAGGCAGGATGATGTAAAGGAAACGGAGAATGAGAATTCTGGAGAGAGAGTAGGAGAG 342
Query 280 GAAGCTCCTGGCAGGGAACATGAAGATTCTCCATGTCCCATGGTCATTGAAGAAGGTACT 339
|||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 343 GAAGCTCCTGTCAGGGAACATGAAGATTCTCCATGTCTCATTGTTATTGAAGAAGGTACT 402
Query 340 TCTCTTGCTTCCCTTGAgggggggAACAATGCCGATGATCTGCCGAAGATTGATGAGGAA 399
|| || ||||||||||||| || || |||||| |||||||||||||||| | | |
Sbjct 403 TCCCTAGCTTCCCTTGAGGAGGTGACCAATGCTGATGATCTGCCGAAGA-T--T---G-- 454
Query 400 ACCCTTGATGAGAAGAATTCCCAATTAGAAACAAGCCCGCATCCAAGCT-CTTCTCCTTC 458
| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 455 A----TGATGAGAAGAATTCCCAATTTGAAACAAGCCCGCATCCAAG-TCCTTCTCCTTC 509
Query 459 AGTAGCTTTAGACACTGACGAAGGGTTTATCAACCCTACTGTGGAAGACACTGTAGAACA 518
|||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
Sbjct 510 AGTAGCTTTAGACACTGAAGAAGGGTTAATCAACCCTACTGCAGAAGACACTGTAGAAGA 569
Query 519 GAACACAGGGTCTACCGAATTAAGTTCGGATATCTTGAAAGATGACGGAGATGATGTCAA 578
||||| || ||||| |||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 570 GAACATAGTGTCTAGCGAAGTAAGTTCGGATATCTTGAAAGATGACGGAGATGCCGTCGA 629
Query 579 GGTTGACAGATATACTGCAGTAGTCCATGAAGAAACGGCCAA-AGTACCTGACTTCAAAC 637
|||||||||| ||||||||| |||||| |||||||||||||| | ||||||| | |||||
Sbjct 630 GGTTGACAGAGATACTGCAGAAGTCCAGGAAGAAACGGCCAACA-TACCTGAATCCAAAC 688
Query 638 TCTCGGAGGAGGAAACAGGATCACCGCATCATCATGCTGATATTGTGATGGAGCAGGAAA 697
|||| |||||| ||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 689 TCTC---GGAGGACACAGGATCACCTCATCATCATGCTGATATTCTGATGGTGCAGGAAA 745
Query 698 AAGCTGCAGAAGAACATGACATGATAGCCTCAGGAGACCATGACGAATTTCCAGTCAATC 757
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 746 AAGCTGCAGAAGAACATGACATGATAGCCTCTGGAGACCATGAAGAATTTCCAGTCAATC 805
Query 758 CTGATAACAAACACTCGGAAGAAAAAGGA-ACATTGCATCATCATACTAATACTGTGATG 816
|||||||||||||||| |||| |||| | || ||||||||| |||||| |||||||
Sbjct 806 CTGATAACAAACACTCTGAAG-AAAATCAGTCACCACATCATCATGCTAATAATGTGATG 864
Query 817 GAGCAGGACCAAGCTGCAGAAGAACATGAGATCATATCCTCAGGAGACCA-AGATGAATT 875
||||||||||||||||||||||||| ||||||||||||| ||||||| || | | ||| |
Sbjct 865 GAGCAGGACCAAGCTGCAGAAGAACGTGAGATCATATCCCCAGGAGAACATA-AGGAAAT 923
Query 876 TCCAGCGAATTCTGATACCAAAGTTGTTGAGGAGAACAATGACAGTATGGATGAGGGTGA 935
|||||| ||| ||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 924 TCCAGCCAATCCTGATACTAAAGTTGTTGAGGAGAACAATGACAGGATAGATGAGGGTGA 983
Query 936 GGCTAACAATATGAATTTGGCTGGCGATGGAAGTGG-GCCAGACGATCATGA-T-CGTGG 992
|||||||||| ||||||||||||||||||||||||| | ||| ||||||||| | | |
Sbjct 984 GGCTAACAATTTGAATTTGGCTGGCGATGGAAGTGGAG-CAGTCGATCATGATTAC-T-T 1040
Query 993 GACCATAACAGAGCTTGACAAAGGGCTAGAGGTGCCTGGTTCTGAGACCATATCAGAACT 1052
||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1041 GACCAAAACGGAGCTGGACAAAGTGCTAGAGGTGCCTGGTTCTGAGACCATATCAAAACT 1100
Query 1053 GGAGGATAAGCCATCTGAGCCTCTCTCAGAAACCTCAATGAACGTGGAAAAAGAACTAGA 1112
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GGAGGATAGGCCATCTGAGCATCTCTCAGAAACCTCAATGAACGTGGAAAAAGAACTAGA 1160
Query 1113 CATGCCTGCCACAGAAAATTTGACAGACAATGACAAAAACTCTGATGTGTTGGCAGTTGG 1172
||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1161 AATGCCTGCCGTTGAAATTTTGCCAGACAATGACAAAAACTCTGATGTGTTGGCAGTTGG 1220
Query 1173 AGTTTCAGGCGACAGTGACAAAG-GGTTATCTGTCTTGCCCGCTACCCAAACTTTCTCTG 1231
|||||| || ||||||||||| | || ||||||||||||||||| ||||||||| |||||
Sbjct 1221 AGTTTCTGGAGACAGTGACAATGTGG-TATCTGTCTTGCCCGCTTCCCAAACTTCCTCTG 1279
Query 1232 ATCATGATGAAGGAATGACTACAGTTGATGCTGAACCTACGGAAGACATGAAACTTGATG 1291
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 ATCGTGATGAAGGAATGATTACAGTTGATGCTGAACCTACGGAAGACATGAAACTTGATG 1339
Query 1292 TTCCAGATTCTAAATTGGTTGCTGATACTACTTTTGACTCTACTAATAACAAGGATGCCA 1351
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1340 TTCCAGATTCTAAATTGGTTACTGATACTACTGTTGACTCTACTAATAACAAGGATGCCC 1399
Query 1352 ATGTTGAGGCTAATACTGAAAAGCAAGATAATTCTAGTGCACTTGTGCTAAATGATGCAA 1411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1400 ATGTTGAGGCTAATACTGAAAGGCAAGATAATTCTAGTGCACTTGTGCTAAATGATGCAA 1459
Query 1412 ATAATGAAAGTGCACCAGTGAGACGTGAACACGGTCCTCCTTGTGTTGCTTCTTCTATTA 1471
||||||||||||||||||||| ||||| || | | ||||| |||||| ||||| | ||
Sbjct 1460 ATAATGAAAGTGCACCAGTGAAACGTGTAC-C--TGGTCCTTATGTTGCATCTTCCAATA 1516
Query 1472 TAAAGTCTGAAGCGCGGGGTAGTGGAGATTTGAACAATGGAGTCCATAAAATAGTTCGGA 1531
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1517 TAAAGTCTGAAGCGCGGGGTAGTGGAGATTTGAACAATGGAGTACATAAAATAGTTCGGA 1576
Query 1532 CACCACCTGTCTTTGATGGGACCATGCGCGCAAAGCGCTCTTTCCTCTTGGATGATGCGT 1591
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 CCCCACCTGTCTTTGATGGGACCATGCGCGCAAAGCGCTCTTTCCTCTTGGATGATGCGT 1636
Query 1592 CTGACGGTAATGAATCTGGAACGGAAGAGGACCAATCTGCTTTTATGAAAGAATTGGATA 1651
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1637 CTGATGGTAATGAATCTGGAACGGAAGAGGATCAATCTGCTTTTATGAAAGAATTGGATA 1696
Query 1652 GtttttttAGAGAGCGAAACATGGATTTCAAACCTCCAAAATTTTATGGGGAGGGACTGA 1711
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1697 GTTTTTTTAGAGAGCGAAACATGGATTTCAAACCTCCAAAATTTTACGGGGAGGGACTGA 1756
Query 1712 ACTGCCTCAAGTTGTGGAGAGCTGTAACTAGATTGGGCGGATATGACAAGGTTACTGGAA 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 ACTGCCTCAAGTTGTGGAGAGCTGTAACTAGATTGGGCGGATATGACAAGGTTACTGGAA 1816
Query 1772 GCAAATTATGGCGGCAAGTGGGAGAATCTTTCAGGCCCCCAAAGACATGTACAACAGTAT 1831
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1817 GCAAATTATGGCGGCAAGTGGGAGAGTCTTTCAGGCCCCCAAAGACATGTACAACAGTAT 1876
Query 1832 CATGGACTTTCCGAGGTTTCTATGAAAAGGCTCTTCTTGAATATGAGCGGCATAAAGTTA 1891
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1877 CATGGACTTTCCGAGGTTTCTACGAAAAGGCTCTTCTTGAATATGAGCGGCATAAAGTTA 1936
Query 1892 GTGGAGGTGAACTTCAGATACCCCTTCCGTTGGAACTAGAACCAATGAACATTGATAATC 1951
||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1937 GTGAAGGTGAACTTCAGATACCCCTTCCGTTGGAACTAGAACCGATGAATATTGATAATC 1996
Query 1952 AGGCGTCTGGATCAGGGAGGGCTAGGAGAGATGCAGCAGCACGTGCTATGCAAGGTTGGC 2011
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 1997 AGGCGTCTGGATCAGGGAGAGCAAGGAGAGATGCAGCATCACGTGCTATGCAAGGTTGGC 2056
Query 2012 ATTCACAGCGTCTTAATGGTAACGGTGAAGTTAGTGACTCTGTAATCAAGGATAAGAACT 2071
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2057 ATTCACAGCGTCTTAATGGTAACGGTGAAGTTAGTGACCCTGCAATCAAGGATAAGAACT 2116
Query 2072 TAGTTATTCATCAAAAGCGCGAAAAACAGATTGGAACCACCCCTGGTTTGCTCAAACGCA 2131
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2117 TAGTTCTTCATCAAAAGCGCGAAAAACAGATTGGAACCACCCCTGGTTTGCTCAAACGTA 2176
Query 2132 AGAGGCCTGCTGAACATGGTGCAAAAAATACCATCCAAGTATCTAAACCTATGTTGGATG 2191
||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 2177 AGAGGGCTGCTGAACATGGTGCAAAAAATGCCATCCATGTATCTAAATCTATGTTGGATG 2236
Query 2192 TGACAGTTGTTGATGTTGGACCACCAGCTGACTGGGTCAAGATTAACGTACAGAGGACGC 2251
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2237 TGACTGTTGTTGATGTTGGACCACCAGCTGACTGGGTGAAGATTAACGTACAGAGAACGC 2296
Query 2252 AAGATTGCTTTGAGGTGTATGCATTAGTCCCAGGACTAGTCCGTGAAGAGGTCCGAGTCC 2311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2297 AAGATTGCTTTGAGGTGTATGCATTAGTCCCAGGATTAGTCCGTGAAGAGGTCCGAGTCC 2356
Query 2312 AATCAGATCCGGCTGGGCGGTTGGTAATAAGTGGCGAACCCGAGAACCCTATGAATCCCT 2371
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2357 AATCAGATCCGGCTGGGCGGTTAGTAATAAGTGGCGAACCCGAGAACCCTATGAATCCTT 2416
Query 2372 GGGGAGCGACTCCTTTCAAAAAGGTGGTAAGTTTGCCGACGAGAATCGATCCGCATCACA 2431
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2417 GGGGAGCTACTCCTTTCAAAAAGGTGGTAAGTTTACCAACGAGAATCGATCCGCATCACA 2476
Query 2432 CATCGGCTGTGGTAACCCTTAACGGGCAGTTATTCGTCCGTGTGCCTCTCGAGCAATTGG 2491
||||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||
Sbjct 2477 CATCGGCTGTGGTAACCCTAAACGGGCAGTTATTTGTTCGTGTGCCTCTGGAGCAATTGG 2536
Query 2492 ATTAGAAACATTTACAGTTTAACAAAAGCCTTATGAAGATCTGAAAGAGAGAAGATTGTT 2551
| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2537 AGTAGAAACATTTACAGTTTAACAAA-GCCTT-TGAAGATCTGAAAGAGAGAAGATTGTT 2594
Query 2552 AGAAGTAGTTGTTGAGAGTATTTTGTCTGTATATTCTGAGAGCATAAA-CACAACCTGAG 2610
|||||||||||||||||||||||||| |||||||| |||||| || || |||||| ||||
Sbjct 2595 AGAAGTAGTTGTTGAGAGTATTTTGTTTGTATATTATGAGAG-ATTAAGCACAACATGAG 2653
Query 2611 AAGAGCAGCCTTTAGGAATCCTTAATTAGGTCATCTAGTTTCTATGGTCTCTCCTCTCTT 2670
|||||| | |||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 2654 AAGAGC--C-TTTAGGAATCCTTAATTAGGCCATCTAGTTTTTATTGTCTCTCCTCTCTT 2710
Query 2671 TGATTAGATTCTTCTTCTAAGTGTCATCACTATTGATTTGTTGTAGCACCAAAAT-CTTT 2729
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2711 TGATTAGATTCTTCTTCTAAGTGTCATCACTATTGATTTGTTGTAGCACCAAACTTCTTT 2770
Query 2730 TAAACCTTTTTATTAAGAACACACAAATCTACAACCttttt 2770
|||||||| |||||||||||||||||||||||||||||||
Sbjct 2771 -AAACCTTTCTATTAAGAACACACAAATCTACAACCTTTTT 2810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137708258535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5