BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480627
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17430.1 | Symbols: ATMLO7, MLO7, NTA | Seven transmembrane ... 2623 0.0
> AT2G17430.1 | Symbols: ATMLO7, MLO7, NTA | Seven transmembrane
MLO family protein | chr2:7568018-7570840 FORWARD LENGTH=1711
Length=1711
Score = 2623 bits (1420), Expect = 0.0
Identities = 1600/1688 (95%), Gaps = 8/1688 (0%)
Strand=Plus/Plus
Query 1 ATGATCAAAAGAAGCAGGTGTCGAAGATCGTTGTTATGTTTTTTGGTGTTCCACGGCGGA 60
||||||| ||||||||||||||||||||| |||||||| ||| | |||||||| ||||||
Sbjct 1 ATGATCACAAGAAGCAGGTGTCGAAGATCTTTGTTATGGTTTCTAGTGTTCCATGGCGGA 60
Query 61 GCTACAGCTACCGGAGCTCCCTCTGGCGGGAAACAGCTCTCTCAGACGCCCACTTGGGCG 120
|||||||| ||||||||||||||||| |||||| |||| ||||||||||| ||||||||
Sbjct 61 GCTACAGCCACCGGAGCTCCCTCTGGTGGGAAAGAGCTTTCTCAGACGCCTACTTGGGCA 120
Query 121 GTCGCCGTAGTCTGCACCTTCCTCATCCTAATTTCCCATCTCCTTGAAAAGGGTCTTCAA 180
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GTCGCCGTCGTCTGCACCTTTCTCATCCTCATTTCCCATCTCCTTGAAAAGGGTCTTCAA 180
Query 181 AGACTCGCTGACTGGCTATGGAAGAAGCATAAAAACTCTCTCCTTGAAGCCTTAGAGAAA 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACTCGCCAACTGGCTATGGAAGAAGCATAAAAACTCTCTCCTTGAAGCCTTAGAGAAA 240
Query 241 ATTAAAGCTGAGCTGATGATCATTGGATTCATTTCTTTATTACTCACTTTTAGAGAAACA 300
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 241 ATCAAAGCTGAGCTGATGATCCTTGGATTCATTTCTTTATTACTCACTTTTGGAGAACCA 300
Query 301 TATATTATGAAGATCTGTGTTTCTCGAAAGGCTGATCTCTCTATGTTACCTTGTTCATTT 360
|||||| | |||||||||||| ||||||| |||| |||||||||||||||||||| || |
Sbjct 301 TATATTCTCAAGATCTGTGTTCCTCGAAAAGCTGCTCTCTCTATGTTACCTTGTTTATCT 360
Query 361 GAAGACACAGAGCTTTTCCAGAAACTTGCT-C--CATCTCTTAGCAGACATCTTTTAGCT 417
|||||||||| ||||||||||||||||||| | ||||||||||||| |||||||| |||
Sbjct 361 GAAGACACAGTGCTTTTCCAGAAACTTGCTCCATCATCTCTTAGCAGGCATCTTTTGGCT 420
Query 418 GCTGGTGATATATCTGTGAATTGCAAACAAGGATCTGAGCCACTTATAACATTGAAAGGC 477
|||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GCTGGTGATACATCTATTAATTGCAAACAAGGATCTGAGCCACTCATAACATTGAAAGGC 480
Query 478 TTGCACCAACTTCACATCTTGTTGTTCTTCTTGGCGGTTTTTCATGTCCTCTATAGTTTA 537
||||||||||||||||||||||||||||||||||| | |||||| || | |||||||||
Sbjct 481 TTGCACCAACTTCACATCTTGTTGTTCTTCTTGGCCATCTTTCATATCGTATATAGTTTA 540
Query 538 ATCACTATGATGCTTAGCAGGCTCAAGATACGTGGATGGAAAAAGTGGGAGCAAGAGACA 597
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATCACCATGATGCTTAGCAGGCTCAAGATTCGTGGATGGAAAAAGTGGGAGCAAGAGACA 600
Query 598 TTATCTCATGACTATGAGTTTTCTATTGATCATTCAAGACTTAGGCTCACTCATGAGACT 657
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTATCTAATGACTATGAGTTTTCTATTGATCATTCAAGACTTAGGCTCACTCATGAGACT 660
Query 658 TCTTTTGTGAGAGAACATACAAGTTTCTGGACAACAATTCCTTTCTTCTTTTACGTCGGA 717
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 TCTTTTGTGAGAGAACATACAAGTTTCTGGACAACAACTCCTTTCTTCTTTTACGTCGGA 720
Query 718 TGCTTCTTTAGGCAGTTCTTTGTATCCGTGGAAAGAACCGACTACTTGACTCTGCGCCAC 777
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 721 TGCTTCTTTAGGCAGTTCTTTGTATCTGTTGAAAGAACCGACTACTTGACTCTGCGCCAT 780
Query 778 GGATTCATCTCTGCCCATTTAGCCCCGGGAAGAAAATTCAACTTCCAGAGATATATCAAA 837
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 781 GGATTCATCTCTGCCCATTTAGCTCCAGGAAGAAAGTTCAACTTCCAGAGATATATCAAA 840
Query 838 AGATCACTCGAGGATGATTTCAAGTTGGTAGTAGGAATAAGTCCAGTTCTTTGGGCATCA 897
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 AGATCTCTCGAGGATGATTTCAAGTTGGTAGTTGGAATAAGTCCAGTTCTTTGGGCATCA 900
Query 898 TTTGTGATCTTCTTGCTGTTTAATGTTAATGGCTGGAGAACATTGTTTTGGGCATCGATA 957
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTGTAATCTTCTTGCTGTTCAATGTTAATGGCTGGAGAACATTGTTTTGGGCATCGATA 960
Query 958 CCTCCCCTGCTCATAATCCTAGCTGTTGGCACAAAGCTTCAAGCGATTATGGCAACAATG 1017
||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 961 CCTCCTCTACTCATAATCCTAGCTGTTGGAACAAAGCTTCAAGCAATTATGGCAACAATG 1020
Query 1018 GCGCTAGAAATCGTAGAGACACATGCAATAGTTCAAGGGATGCCTCTAGTGCAAGGTTCA 1077
||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1021 GCGCTAGAAATCGTAGAGACACATGCAGTAGTTCAGGGGATGCCTTTAGTGCAAGGTTCA 1080
Query 1078 GATCAATACTTTTGGTTCGATTGTCCTCAATTGCTTCTTCATCTTATCCACTTTGCCTTG 1137
|||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 1081 GATCGATACTTTTGGTTCGACTGTCCTCAACTACTTCTTCATCTTATCCACTTTGCCTTG 1140
Query 1138 TTTCAGAATGCTTTCCAGATAACACACTTCTTCTGGATATGGTATTCTTTTGGATTAAAA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTCAGAATGCTTTCCAGATAACACACTTCTTCTGGATATGGTATTCTTTTGGATTAAAA 1200
Query 1198 TCATGCTTCCATAAAGATTTCAATCTTGTAGTCATCAAACTCTTTCTATGCCTAGGAGCT 1257
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 TCATGCTTCCATAAAGATTTCAATCTTGTAGTCAGCAAACTCTTTCTATGCCTAGGAGCT 1260
Query 1258 TTAATCTTATGCAGCTACATCACTCTCCCGTTGTACGCCCTAGTTACTCAGATGGGTTCA 1317
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1261 TTGATCTTATGCAGCTACATCACTCTCCCATTGTACGCCCTCGTTACTCAGATGGGTTCA 1320
Query 1318 CACATGAAGAAAGCAGTGTTTGATGAGCAAATGGCAAAGGCATTGAAGAAGTGGCACAAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CACATGAAGAAAGCAGTGTTTGATGAGCAAATGGCAAAGGCATTGAAGAAGTGGCACAAA 1380
Query 1378 GACATCAAACTGAAGAAAGGCAAAGCGAGGAAGCTCCCGAGCAAGACACTTGGTGTTTCA 1437
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GACATCAAATTGAAGAAAGGTAAAGCGAGGAAGCTCCCGAGCAAGACACTTGGTGTTTCA 1440
Query 1438 GAGAGTTTCAGCCTCTCTTCCTCTTCCTCCGCAACTACTCTTCACCGTTCCAAGACCACT 1497
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1441 GAGAGTTTCAGCCTCTCTTCCTCTTCCTCTGCAACCACTCTTCACCGTTCCAAGACCACT 1500
Query 1498 GGTCACTCTTCTAACATGATATACTACAAACAAGAAGATGAAGAAGACGAAATGTCTGAT 1557
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGTCACTCTTCTAACATCATATACTACAAACAAGAAGATGAAGAAGACGAAATGTCTGAT 1560
Query 1558 CTTGAAGCTGGAGCAGAGGATGCTATTGACAGGATTCAACAACAACAGATGGAATTCCAC 1617
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1561 CTTGAAGCTGGAGCAGAGGATGCTATTGACAGGATTCAACAACAGGAGATGCAATTCCAC 1620
Query 1618 CACTCTTAGCTG-TTT--T--CTTCTGTTGTTACTTCAAAGTTCAAATGAAACGATGCTG 1672
||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1621 AACTCTTAGCTGCTTTAGTTTCTTCTGTTGTTACTTCATAGTTCAAATGAAACGATGCTG 1680
Query 1673 TTTACTAA 1680
||||||||
Sbjct 1681 TTTACTAA 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5