BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480628
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17440.1 | Symbols: PIRL5 | plant intracellular ras group-re... 2462 0.0
> AT2G17440.1 | Symbols: PIRL5 | plant intracellular ras group-related
LRR 5 | chr2:7571140-7573799 FORWARD LENGTH=2091
Length=2091
Score = 2462 bits (1333), Expect = 0.0
Identities = 1681/1840 (91%), Gaps = 59/1840 (3%)
Strand=Plus/Plus
Query 1 aagaagaaaagaactgacgaagaaagaatgagaagacgaagaagaaagagaaaacaa-a- 58
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 40 AAGAAGAAAGGAAGTGACGAAGAAAGAATGAGAAGAC---GAAGAAAGAGAAAACAAGAT 96
Query 59 -c-aaacaaactatggaaacatgaaTAT-TT-TT-GACAATCTT-C-T-T-C-TT-TC-T 106
| | |||| ||||||||| ||||||| || || | |||| | | | | || || |
Sbjct 97 CCGATTCAAAATATGGAAACTTGAATATCTTCTTCTTC-TTCTTCCTTCTCCTTTCTCAT 155
Query 107 -TCTC-CTTTGA---T---TTTGTAGAAAATG--G-ATTTGGATTCCAAGGAGAAGGTTG 155
|||| |||||| | ||| | || || | | ||||||| ||||||| |||||
Sbjct 156 CTCTCACTTTGAGGGTGAATTT-T-GATTTTGTAGAAAATGGATTCGAAGGAGATGGTTG 213
Query 156 TGGAAGAAATAATGAGAATTCACAGATCTCTTCC-TTGTAGACCAGAGATCGAAGATGTA 214
|||||||||| |||||||||||||||||||| || ||| |||||||||||||| ||||||
Sbjct 214 TGGAAGAAATCATGAGAATTCACAGATCTCTACCATTG-AGACCAGAGATCGACGATGTA 272
Query 215 GAAACCGCAACTTCTCTGATACAAGACGTTGAAAAAGAAGATCGGGATCGCTTAGAAGCC 274
||||| |||||||||||||||||| |||||||||| ||||||||| |||| |||||||||
Sbjct 273 GAAACGGCAACTTCTCTGATACAAAACGTTGAAAAGGAAGATCGGAATCGTTTAGAAGCC 332
Query 275 ATTGATAAACAGATGATT-AAA-C-CTTCCTCTGATGTTCCTAAAGAGCTTTTCAATGTG 331
|||||||||| || || ||| | |||||||||| |||||| ||||||||||||||||
Sbjct 333 ATTGATAAAC--TTG-TTAAAACCTCTTCCTCTGAGGTTCCTTTAGAGCTTTTCAATGTG 389
Query 332 TTGAAGGAGATGAAGAAAAGTCTTGTTCATTTCCAAAGCAAAGAACAGAGAAGAGAAGCT 391
|| ||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||
Sbjct 390 TTCAAGGAGATGAAGAAAAGTCTTGTTCGTTTCCAGAGCACAGAACAGACAAGAGAAGCT 449
Query 392 ACGAAAATTCTCGATCTGGAATCTGTACACGTTGTGTTCGACGAATTGATTCAGAGAGCT 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACGAAAATTCTCGATCTGGAATCTGTACACGTTGTGTTCGACGAATTGATTCAGAGAGCT 509
Query 452 TCTTTTTGCATTGCTTCTCCTAACGGCACCAGTACCACCTCTCTGCATCGGTCTCTTCCG 511
|||||||||||||||||||| ||| ||||| ||| || | ||| ||||||| |||||
Sbjct 510 TCTTTTTGCATTGCTTCTCCCAACAGCACC---ACC-GCT-T-TGCCTCGGTCTGTTCCG 563
Query 512 GCACAAGAACCGGTTGTTTCTTCTCATGAGATT-CTTGTGAAGTCAAAGGAAATTATCTC 570
| || | ||||||||||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct 564 GTACCGGCGCCGGTTGTTTCTTCTGATGAGATTCCTT-TCAAGTCAAAGGAAATTATCTC 622
Query 571 GCGTGATGATACGTTTGTGAAGAAAGCTAAATCTTCGTTTTATAGTGATGGGTTGTTAGC 630
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GCGTGACGATACGTTTGTGAAGAAAGCTAAATCTTCGTTTTATAGTGATGGGTTGTTAGC 682
Query 631 TCCTTGTAAGCCCCAGGTTTTGGATTCAACATTTCATCAGGCTAAGAACGTCACAGGTGT 690
|||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct 683 TCCTAGTAAGCCCCAGGTTCTGGATTCAACACTTCATCAGGCTAAGAACGT------TGC 736
Query 691 AGGCCATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAAGTATCGGC 750
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 737 AGGCAATGATGGGGAGAAGTTGAGTCTCATAAAACTTGCTAGTTTGATTGAGGTATCTGC 796
Query 751 CAAGAAAGCTACTCCGGAGCTAAATCTGCAGCACAAGCTGATGGATCAGCTCGAATGGCT 810
|||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 797 CAAGAAAGCTACTCAAGAGCTAAATTTGCAGCACAGGCTGATGGATCAGCTCGAATGGCT 856
Query 811 TCCGGATTCTTTAGGCAAGTTATCGAGTCTTGTTAGGCTAGATTTGTCTGAGAATTGTAT 870
|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 857 TCCGGATTCTCTAGGCAAGTTATCGAGTCTTGTCAGGCTAGATCTGTCTGAGAATTGTAT 916
Query 871 TATGGTACTACCGGCAACCATAGGAGGGCTT-TTGTCCTTGACGAAGCTTGATTTGCATT 929
|||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||
Sbjct 917 CATGGTACTACCGGCAACCATAGGAGGGCTTATT-TCTTTGACGAGGCTTGATTTGCATT 975
Query 930 CGAATAGAATTGCTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGATCAACCTGA 989
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 976 CGAATAGAATTGGTCAGCTCCCTGAGTCTATAGGAGATTTGCTAAACTTGGTCAACCTGA 1035
Query 990 ATCTTAGTGGAAACCAATTATCATTTCTTCCATCAG-CATTTAGTAGATTGATACATCTC 1048
|||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||
Sbjct 1036 ATCTTAGTGGAAACCAATTATCATCTCTTCCATC-GTCATTTAATAGATTGATACATCTT 1094
Query 1049 GAGGAACTTGATTTGAGCTCTAACAGCCTCACCATTCTCCCTGAATCTATCGGTTCTCTC 1108
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 1095 GAGGAACTTGATTTGAGCTCTAACAGCCTCTCTATTCTCCCTGAATCTATTGGTTCTCTC 1154
Query 1109 GTGAGCCTAAAGAAGCTTGAGGTTGAAACAAATAACATCGAAGAGATTCCGCATAGTATC 1168
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1155 GTGAGCCTAAAGAAGCTCGATGTTGAAACAAATAACATCGAAGAGATTCCACATAGTATC 1214
Query 1169 TCTGGCTGTTCTTTCC-TGAAAGAACTCCGTGCAGATTACAACCGACTTAAAGCTCTTCC 1227
||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1215 TCTGGCTGTTC-TTCCATGGAAGAACTCCGTGCAGATTACAACAGACTTAAAGCTCTTCC 1273
Query 1228 AGAAGCTGTTGGGAAGTTATCTACCTTAGAGATTCTGACTGTCCGTTACAATAACATTCG 1287
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1274 AGAAGCTGTTGGGAAGTTATCTACCTTAGAGATTCTGACTGTCCGTTATAATAACATTCG 1333
Query 1288 GCAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGTGAGTTTCAA 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GCAGCTACCCACAACAATGTCCTCCATGGCTAACCTCAAAGAGCTAGATGTGAGTTTCAA 1393
Query 1348 CGAGCTTGAGTCAGTACCAGAGAGCTTATGTTATGCCAAAACACTTGTCAAGCTGAACAT 1407
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1394 CGAGCTTGAGTCAGTACCAGAGAGTTTATGTTATGCCAAAACACTTGTTAAGCTTAACAT 1453
Query 1408 TGGGAACAATTTTGCCAACCTGAGATCACTCCCGGGGTTAATAGGCAACCTTGAGAAGCT 1467
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1454 CGGGAACAATTTTGCCAACCTAAGATCACTCCCGGGATTAATAGGCAACCTTGAGAAGCT 1513
Query 1468 AGAAGAGCTTGATATGAGCAATAACCAGATCCGTTTCCTTCCTTACTCTTTCAAAACGCT 1527
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1514 AGAAGAGCTTGATATGAGCAATAACCAGATCCGTTTCCTTCCCTACTCTTTTAAAACGCT 1573
Query 1528 TTCACAGCTGCGTGTTCTTCACACAGAACAAAATCCACTTGAAGAGCTTCCAAGAGATAT 1587
|||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1574 TTCAAATCTGCGTGTTCTTCAAACAGAACAAAATCCACTTGAAGAGCTTCCAAGGGATAT 1633
Query 1588 AACCGAAAAGGGCGCACAGGCCGTGGTTCAATACATGAATGATCTCGTGGAGGCAAGAAA 1647
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1634 AACCGAAAAAGGCGCACAGGCCGTGGTTCAATACATGAATGATCTTGTGGAGGCAAGAAA 1693
Query 1648 CACCAAATCTCAAAGAACTAAGCCGAAAAAGAGCTGGTTTAACAGTAGTTGCTTCTTCTG 1707
||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 1694 CACCAAATCTCAAAGAACTAAGCCGAAAAAGAGTTGGGTTAACAGTATTTGCTTCTTCTG 1753
Query 1708 CAAGTCCTCCACCAACTAGAGAAAACAGAGCAGCACGAAGATCCTCTAAACCACTCTGAA 1767
||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1754 CAAGTCCTCTACCAACTAGAGAAAACAGAGCAGCATGGAGATCCTCTAAACCACTCTGAA 1813
Query 1768 CAAATCTGACCTTTTAATCTTCAGGCAGAACAGAAGAATC 1807
|||||| |||||||||||| |||||||| |||||||||||
Sbjct 1814 CAAATCCGACCTTTTAATCGTCAGGCAGGACAGAAGAATC 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5