BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480629
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17450.1 | Symbols: RHA3A | RING-H2 finger A3A | chr2:757647... 1181 0.0
> AT2G17450.1 | Symbols: RHA3A | RING-H2 finger A3A | chr2:7576474-7577300
REVERSE LENGTH=827
Length=827
Score = 1181 bits (639), Expect = 0.0
Identities = 712/747 (95%), Gaps = 6/747 (1%)
Strand=Plus/Plus
Query 1 ATTATAACGTGGATCAAGATTCTTTCTTATCTTCATCACTCCACACATTTTCTTGTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATAACGTGGATCAAGATTCTTTCTTATCTTCATCACTCCACACATTTTCTTGTCTTC 60
Query 61 AAACTCACACaaagaaaagaaaaaaaaatctccaaagctcaaaaa-aaaTGACTCGACCG 119
|||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||
Sbjct 61 AAACTCACACAAAG-AAAG----AAAAGTCTCCAAAGCTCAAAAAGCAATGACTCGACCG 115
Query 120 TCAAGATTGCTCGAGACGGCGGCGCCGCCACCACAACCGTCGAAGGAGATGATCGCAGAG 179
|||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct 116 TCAAGATTACTTGAGACGGCGGCGCCACCACCACAACCGTCGGAGGAGATGATCGCAGCG 175
Query 180 GAATCCGACATGGTAGTGATCTTGTCGGCTCTTCTTTGCGCTCTTATATGTGTAGCTGGC 239
|||||||||||||| |||||||||||||||||||||||||||||||| || || |||||
Sbjct 176 GAATCCGACATGGTGGTGATCTTGTCGGCTCTTCTTTGCGCTCTTATCTGCGTTGCTGGT 235
Query 240 CTCGCCGCCGTCGTACGTTGCGCTTGGCTCCGGCGATTTACCGTCGGAGGAGATTCGCCG 299
||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 236 CTCGCCGCCGTCGTACGATGCGCTTGGCTCCGGCGGTTTACAGCCGGAGGAGATTCGCCG 295
Query 300 TCACCGAACAAAGGCTTGAAAAAGAAAGCTCTTCAGTCTCTTCCAAGATCCACTTTCACC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCACCGAACAAAGGCTTGAAAAAGAAAGCTCTTCAGTCTCTTCCAAGATCCACTTTCACC 355
Query 360 GCCGCGGAATCAACCTCCGGCGCCGCCTCTGACGACGGAGACTCAACGGAATGTGCTATT 419
||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||
Sbjct 356 GCCGCGGAATCAACCTCCGGCGCCGCCGCTGAAGAGGGAGACTCGACGGAATGTGCTATT 415
Query 420 TGTCTCACTGACTTCGCCGACGGCGAAGAAATAAGAGTGCTTCCTCTTTGTGGACATTCT 479
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 416 TGCCTCACTGACTTCGCCGACGGTGAAGAAATAAGAGTGCTTCCTCTTTGTGGTCATTCT 475
Query 480 TTCCACGTGGAGTGTATTGACAAATGGCTAGTTTCTAGGTCTTCGTGTCCTTCTTGTCGC 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 TTCCACGTGGAGTGTATTGACAAATGGCTAGTTTCTAGGTCTTCTTGTCCTTCTTGTCGC 535
Query 540 CGGATTCTTACGCCGGTGAGATGTGACCGGTGTGGTCATGCTTCTACGGCGGAGATGAAA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGGATTCTTACGCCGGTGAGATGTGACCGGTGTGGTCATGCTTCTACGGCGGAGATGAAA 595
Query 600 GATCAAGCTCATCGTCATCAACATCACCAACACTCTTCTTCTACCATTCCAACGTTTCTT 659
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 596 GATCAAGCTCATCGTCATCAACATCACCAACACTCTTCTACTACCATTCCTACGTTTCTT 655
Query 660 CCTTAATTAACACTAATTTTTGTTTTATTATGGCAATAATTGATTGCATAAAAGTTATGT 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 CCTTAATTAACACTAATTTTTGTTTTATTATGGCAATAATTAATTGCATAAAAGTTATGT 715
Query 720 AAAGTGAGTTTAATTAGGAATAGAGAG 746
||||||||||||||||||| |||||||
Sbjct 716 AAAGTGAGTTTAATTAGGATTAGAGAG 742
Score = 87.9 bits (47), Expect = 1e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 746 GTTGTAATCCACTGTACTTAATCAAATCTCAGATGGAGTTCAAATTTCGAGAT 798
||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 774 GTTGTAATCCAGTGTATTTAATCAAATCTCAGATGGAGTTCAAATTTCGAGAT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5