BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480634
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17500.1 | Symbols: | Auxin efflux carrier family protein |... 2272 0.0
> AT2G17500.1 | Symbols: | Auxin efflux carrier family protein
| chr2:7606757-7609261 FORWARD LENGTH=1676
Length=1676
Score = 2272 bits (1230), Expect = 0.0
Identities = 1378/1448 (95%), Gaps = 16/1448 (1%)
Strand=Plus/Plus
Query 87 ATaaaaaaaTGGGATTCTGGTCATTGTTGGAGGTGGCTTCTATGCCGGTTTTTCAAGTTC 146
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 207 ATAAAAAGATGGGATTCTGGTCGTTGTTGGAGGTGGCTTCTATGCCGGTTATTCAAGTTC 266
Query 147 TTGTCATGAGTCTTGTGGGAGCTTTCTTGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 206
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 267 TTTTCATGAGTCTTGTGGGAGCTTTCATGGCCTCTGATCGTTGCAAGCTCTTCCCTGTTG 326
Query 207 AAGCTCGCAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 266
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 AAGCCCGTAATTCCATGAACAAGGTGGTGTTTGTACTATTTGCACCGGCTCTCATGTTTG 386
Query 267 CCAATCTAGCTCAGACGGTGACACTTGAAGACATTATCTCATGGTGGTTTATGCCGGTGA 326
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 387 CCAATCTAGCTCAGACGGTTACACTTGAAGACATCATCTCATGGTGGTTTATGCCGGTGA 446
Query 327 ACATGGGACTTACATTCCTAATCGGAGGACTTCTTGGGTGGATAGTTGTTAAGATTTTGA 386
|||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 447 ACATGGGACTTACATTTCTAATCGGAGGACTTCTTGGGTGGTTGGTTGTTAAGATTTTGA 506
Query 387 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AACCACCTCCTTATCTTGAAGGTCTTATTGTTGCAACTTGTTCTGCAGGAAATATGGGGA 566
Query 447 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGATAAGAGTCCGTTTGGTAACC 506
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 567 ACCTACCAATCATACTTGTCCCAGCAATCTGCGATGAGGACAAAAGTCCTTTTGGTAACC 626
Query 507 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GAAGTGTATGTAGAACCGTCGGGCTCTCTTACGCGTCTTTCTCCATGGCGCTAGGGGGTT 686
Query 567 TCTACATATGGACATACACATTTCGGTTGATAAAAGGGTCCGCAATGAGAA-TTCAAGCC 625
|||||||||||||||||||||| ||| |||| |||||||||||||||| || ||||||||
Sbjct 687 TCTACATATGGACATACACATTCCGGCTGATTAAAGGGTCCGCAATGA-AAGTTCAAGCC 745
Query 626 ATAGAAGAATCTGAGAGAACAGCAATTAAATCATCCAATAGCGACTTAGAGGCTGATCAT 685
|||||||||||||||| || ||||||||||||||||||||| |||||||| |||||||||
Sbjct 746 ATAGAAGAATCTGAGAAAATAGCAATTAAATCATCCAATAGTGACTTAGAAGCTGATCAT 805
Query 686 AAGACCCATCTCCTCGGTGCACCCGAAGATAAGGAAAACAAAGTGGTAAAGGAAGAGACA 745
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 806 AAGACCCATCTCCTCGGTGCACCGGAAGACAAGGAAAACAAAGTGGTAAAGGAAAAGACA 865
Query 746 GGGTTTTGGAGGAAAGTAGTAGACTTCCTCCATGATATATTGGAGGAACTTCTCGCACCA 805
||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 866 GGGTTTTGGAGAAAAGGAGTAGACTTCCTCCATGAGATATTGGAGGAGCTTCTTGCACCA 925
Query 806 CCTACACTTGGTGCAATTATCGGTTTCATCTTCGGTGCAGTTAGATGGCTCAGAAATCTT 865
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 926 CCTACACTTGGTGCAATTATCGGTTTCATTTTCGGTGCAGTAAGATGGCTCAGAAATCTT 985
Query 866 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATCATAGGTGATGATGCTCCTTTACGAATAGTACAAAGCACTGCAAAACTTCTTGGAGAT 1045
Query 926 GGGACCATTCCTTGTATGACTATTATACTAGGGGGCAACCTCATTCAAGGTTTACGTTCT 985
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1046 GGGACCATTCCCTGTATGACTATTATACTAGGGGGAAACCTCATACAAGGTTTACGTTCT 1105
Query 986 TCGGCAGTCAAACC-AGTGGTTGTTCTTGGAATAGTCTGTGTTCGGTACATTAT-TATGC 1043
|||||||||||||| | ||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1106 TCGGCAGTCAAACCGA-TGGTTGTACTTGGAATAGTCTGTGTTCGGTACAT-AGCTATGC 1163
Query 1044 CAATTATCGGTATAGGCATTGTACTAACAGCTGCGAATCTCGGATTTCTTCCAGCGGATC 1103
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1164 CAATTATCGGTATAGGCATTGTACTAACAGCTGCAAATCTCGGATTTCTTCCAGCTGATC 1223
Query 1104 CTTTGTTTCAGTATGTTTTGATGCTTCAATTCACCCTCCCGCCTGCCATGAATATCGGTA 1163
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1224 CTTTGTTTCAGTATGTTTTGATGCTTCAGTTCACCCTCCCGCCTGCCATGAATATCGGTA 1283
Query 1164 CCATGACACAGCTGTACAATGTTGCGCAAGACGAGTGCTCAGTGCTCATGCTTTGGACCT 1223
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1284 CCATGACACAGCTGTACAATGTTGCTCAAGACGAATGCTCAGTGCTCATGCTTTGGACCT 1343
Query 1224 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 ACTTGGTCGCGATACTGGCCCTCACTGTATGGTCCACCATCTTCCTTCACTTGTTAGTCT 1403
Query 1284 AGAGAACCTGCAACTCT--ATGAGAACAAGAAGATTCTTTCTCTCTACTACTACAGAGAC 1341
| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1404 AAAGAACCTGCAACTCTGTATGAGCACAAGAAGATTCTATCTCTCTACTACTACAGAGAC 1463
Query 1342 CATGAGGAAAACTCTGTGAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1401
| || | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 C--GAAG----CTCTGTCAAGGGATCTTACCATTCTTTTTGTCTATCACATAAAATTTGA 1517
Query 1402 TTGTAACTTGATAGATTTTTCTGGTTGCATGTGTGCCTTTCTGCAAATCTTCATTTTTCT 1461
| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1518 TCATAACTTGATAGATTTTTCTGGTTGCATGCGTACCTTTCTGCAAATCTTCATTTTTCT 1577
Query 1462 CCATATCCCCATTTGTAAAACGCAAATATTGTATCAAGTATTACATCATGTT-AATGAAA 1520
||||||||| ||||||||| ||| |||||||||||||||||||||||| ||| |||||||
Sbjct 1578 CCATATCCCGATTTGTAAA-CGCCAATATTGTATCAAGTATTACATCAAGTTTAATGAAA 1636
Query 1521 AAGCATAT 1528
||||||||
Sbjct 1637 AAGCATAT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77459440935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5