BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480637
Length=2894
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17520.1 | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclea... 4340 0.0
> AT2G17520.1 | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclease/protein
kinase IRE1-like | chr2:7617210-7621109 FORWARD
LENGTH=2915
Length=2915
Score = 4340 bits (2350), Expect = 0.0
Identities = 2750/2934 (94%), Gaps = 64/2934 (2%)
Strand=Plus/Plus
Query 1 AAGAAGATTCAAAAGGAAAACGCGTTAGGCACACT-AGGGTGGGGGCAAGGGAGGAGAAA 59
||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 4 AAGAAGATTCAAAAGGAGAACGCGTTAGACACACTAAGGGTGGGGGCAAGGGAGGAGAAA 63
Query 60 CTCG-C---C---G--GGAGATCCCTAAACCGCAGCCTCACACAAAACCTTCGCATCTTA 110
|||| | | | |||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 64 CTCGCCGGACAGAGACGGAGATCCCTAAACCGCAGCCTCAGACTAAAGCTTCGCATCTTA 123
Query 111 TCTCC-AT---TGGTTGACTTCAC-CATCAGCTG------ATCATCATCTCTATCTCTGT 159
||||| || | ||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 124 TCTCCGATCCATCGTTGACTTCACTC-TTAGCTGATCATCATCATCATCTCTATCTCTGT 182
Query 160 TCAGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCGTTTCCTCCGCCATCTA 219
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 183 TCGGATTCTCCATAATTGATCCGGACCATGCCGCCGAGATGTCCTTTCCTCCGCCATCTT 242
Query 220 TTCTTCTTACTACTGTTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGAC 279
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTCTTCTTACTACTATTACTCTCACCATGGATCATGTCTCCTTGCGGCGGCGCTGCCGAC 302
Query 280 GATGTGACGTATCCGATCGTGCCATCTAGTCCTGGTCGCAGAACGATTTTGCAGA-T--T 336
|||||||||||||||||||| ||||||||||| || |||||| | |||||||||| | |
Sbjct 303 GATGTGACGTATCCGATCGTTCCATCTAGTCCCGGCCGCAGATCAATTTTGCAGATTCGT 362
Query 337 CGT-------C-A-TGAGCCCAATACG-AACTTTGATGTTGATCCGT-CTGGGAAAGTGT 385
||| | | ||||| |||||| ||| ||| ||||||| ||| |||||| ||||
Sbjct 363 CGTGAACCACCAACAGAGCCAAATACGAAAC-TTGTTGTTGAT-CGTGATGGGAAGGTGT 420
Query 386 TTTTAAAGCAGCAATCACCAGCGCAAACA--ATA-TGGTCCTTTTCAACAGGATCACCTA 442
|||||||||||||| | | | | ||||| ||| ||||||||||||||||||||||| |
Sbjct 421 TTTTAAAGCAGCAA-C-CGAAAG-AAACACCATACTGGTCCTTTTCAACAGGATCACCAA 477
Query 443 TGCATTCGTTATATCAGGCTCCTCTAAGTGCTAATAACAACACAGAAAATGCTACTGAGA 502
|||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 478 TGCACTCGTTATATCAGGCT-C-C----TGCTAATAACAACACAGAAAATGCTACTGAGA 531
Query 503 TAAGC-CGTCCTCACATAATTGTAGAATATCTGAACAACTCAAAGGCGGCTACAACTGTT 561
||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 532 TAA-CTCGTCCTCACATAATTGTTGAATATCTGAACAACTCAAAGGCGGCTACTACTGTC 590
Query 562 GATGGCTATCATAATTGGACAGTTCAGGACTTTTTTAGGCAGAGGCCACTTGTGACGGAT 621
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||
Sbjct 591 GATGGCTATCATAATTGGACAGTTCAGGAGTTTTTTAGGCAGAAGCCACTTGTAACAGAT 650
Query 622 GATGGTGTGACTCTTGGGTCAGAAACAACTACTGCCTATTTGGTTGATGGTAGATCAGGG 681
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 651 GATGGTGTGACTCTTGGATCAGAAACAACTAGTGCCTATTTGGTTGATGGTAGATCAGGG 710
Query 682 AGGCTGATTCATGTTTACAAATCAACCGGAGATACTAAAATTACTAATGCTATGGTGAAG 741
|||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||
Sbjct 711 AGGCTGATTCATGTTTACAAATCAACTGGAGATACTAAGATTACTAATGCTCTCGTGAAG 770
Query 742 CCCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CCCGCTAGCACTGAAGATTTTGTGAATGAACCTCTTCTTATCAGGCGAACAGATTCCAAA 830
Query 802 CTAGAGCATTTTAGTAAAACCACTGGAAAGCTTGTGTGGAATTTGACGGTTTCTCACTTC 861
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 831 CTTGAGCATTTTAGTAAAACCACTGGGAAGCTTGTCTGGAATTTGACGGTTTCTCACTTC 890
Query 862 AGAGCTTCTTTACTATGTGATCCAGTTTTCAATTCTGGCTATGAGCTCGGTCCTAAACTT 921
|||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 891 AGAGCTGCTTTACTATGTGATCCTGTTTTCAATTCTGGCTATGACCTCGGTCCTAAACTT 950
Query 922 CAAACTGGAATTTATATGCCATTGGTATGTGGGTCACAAATTGACGTTCGTGGCCCAGAA 981
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 951 CAAACTGGAATTTATATGCCATTGTTATGTGGATCACAAATTGACGTTCGTGGCCCAGAA 1010
Query 982 ATTGTTATTAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCC 1041
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 ATTGTTATCAGGGTGCTCCATGATCAGCCAATGAATGTGAAAATGCTACCCTCCCCTTCC 1070
Query 1042 CAAAATCACTTAGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAATCAAGG 1101
| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 CTAAATCACTTCGAGAGCGAAAACAGCATCATGCCTTTTGGAAAAGCCAGAGAGTCAAGA 1130
Query 1102 AAGTTACAAGAGCAACATGGGCACAAATATAGATATGTGTTTGGACAATGGTCACCAGTA 1161
|||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||
Sbjct 1131 AAGTTACAAGAGCAACATAAGCAGAAATATACATATTTGTTTGGACAATGGTCACCAGTA 1190
Query 1162 AAGTTATTGGTCCCTTTAGTGCTTCTGGGTGTTGTTATCTCTGTTTTCATTAAAAAGTTT 1221
|||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1191 AAGTTATTGGCCCCTTTAGTGCTTCTAGGTGTTGTTGTCTCTGTTTTCATTAAAAAGTTT 1250
Query 1222 TCTTCGAGTGGCAGTGATGTTAGTTCGAAATCTGGACCTTCCAAAAAGAAGAAGAACCGT 1281
|| ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1251 TCGTCGAGGGGCAGTGATGTTAGTTTGAAAGCTGGACCTTCCAAAAAGAAGAAGAACCGT 1310
Query 1282 AAATCAGGGAAGGATGCAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAATTCGAGCTC 1341
||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1311 AAATCCGCGAAGGATACAAATAGGCAGTCAGTTCCTCGTGGCCAGGATCAGTTCGAGCTC 1370
Query 1342 ATTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCCAAGTGGTGCAACTGATGGG 1401
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1371 ATTGAAGGAGGTCAAATGTTACTAGGCTTCAATAACTTTCAAAGTGGTGCAACTGATGGG 1430
Query 1402 CGAAAGATCGGTAAGTTGTTTTTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACT 1461
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1431 AGAAAGATCGGTAAGTTGTTTCTGTCAAGTAAAGAAATTGCAAAGGGAAGTAACGGAACT 1490
Query 1462 GTGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCAGTAAAACGCATTGTTCGATCT 1521
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1491 GTGGTGTTTGAGGGTATTTACGAAGGCCGGCCTGTAGCTGTAAAACGCCTTGTTCGATCT 1550
Query 1522 CATCATGAGGTTGCTTTCAAGGAGATTCAAAACCTCATTGCATCAGACCAACACTCAAAC 1581
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1551 CATCATGAGGTTGCTTTCAAAGAGATTCAAAACCTCATTGCATCAGACCAACACACAAAC 1610
Query 1582 ATCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAACGT 1641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1611 ATCATTCGGTGGTATGGTGTGGAGTATGATCAAGATTTTGTATACCTTTCTCTAGAGCGT 1670
Query 1642 TGCACGTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAATA 1701
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1671 TGCACCTGCAGTTTAGATGATCTAATCAAATCCTATTTAGAGTTTTCTATGACAAAAGTA 1730
Query 1702 TTGGGAAGCAACGATTCTACTGAAGGAGTGGCTGCCTGTAAGATCCAACTTGATTCTTTG 1761
|||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1731 TTGGAAAACAACGATTCTACTGAAGGAGTGGCTGCTTATAAGATCCAACTTGATTCTTTG 1790
Query 1762 GAGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGCCACCCGTCACCCCTCATG 1821
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1791 GAGGGAGTTATCAAAGGAAACAACTTTTGGAAAGTGGGGGGTCACCCGTCACCTCTCATG 1850
Query 1822 CTTAAACTAATGAGTGATATAGTTTGTGGGATCGTCCACTTACACGAATTGGGAATAGTT 1881
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1851 CTTAAACTAATGAGGGATATAGTTTGTGGAATCGTCCACTTACACGAATTGGGAATAGTT 1910
Query 1882 CATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGAGATGACTTTGAGTGCAAAA 1941
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1911 CATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGATATGACTTTGAGTGCAAAA 1970
Query 1942 CTTTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTT 2001
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CTGTCCGATATGGGCATTAGCAAGCGTATGTCCAGAGATATGTCATCATTGGGTCACCTT 2030
Query 2002 GCAACAGGTTCTGGTAGTTCGGGTTGGCAAGCACCAGAGCAGCTTCTACATGGTCGTCAA 2061
|| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2031 GCCACAGGTTCTGGCAGTTCGGGCTGGCAAGCACCAGAGCAGCTTCTACAAGGTCGTCAA 2090
Query 2062 ACTCGTGCAGTGGACATGTTTAGTTTAGGTTGTCTCATCTTTTACACGATAACCGGTTGT 2121
||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2091 ACTCGTGCAGTCGATATGTTTAGTTTAGGTTGTGTCATCTTTTACACTATAACCGGTTGT 2150
Query 2122 AAGCATCCATTTGGAGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGAC 2181
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 AAGCATCCCTTTGGTGATGATCTTGAACGAGATGTCAATATTGTGAAGAACAAAGTCGAC 2210
Query 2182 CTATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTGAACCCA 2241
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2211 CTATTTCTAGTAGAACACGTTCCAGAAGCTTCAGACCTCATATCCCGTTTGTTAAACCCA 2270
Query 2242 GACCCTGATTTACGTCCTAGCGCAAGC-GAAGTGCTACTCCATCCTATGTTTTGGAACTC 2300
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2271 GACCCTGATTTACGTCCTAGCGCAA-CTGAAGTGCTACTCCATCCTATGTTTTGGAACTC 2329
Query 2301 AGAGATGAGACTATCTTTCCTTCGGGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGA 2360
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2330 AGAGATGAGACTGTCTTTCCTTCGTGATGCTAGTGACCGAGTTGAGCTTGAAAATAGAGA 2389
Query 2361 AGCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAA 2420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 AGCTGATTCTGAAATCTTGAAAGCAATGGAGAGTACAGCTCCAGTGGCTATAGGAGGGAA 2449
Query 2421 ATGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATTGGGCGCTACAGGCGTTACAA 2480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2450 ATGGGATGAAAAGCTAGAACCTGTTTTCATCACAAACATCGGGCGCTACAGGCGTTACAA 2509
Query 2481 ATACGATAGCATTCGTGACTTGCTACGAGTTATCAGAAACAAACTGAATCATTATCGAGA 2540
|||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 2510 ATACGATAGCATCCGTGACTTGTTACGAGTCATCAGGAACAAACTGAATCATCATCGAGA 2569
Query 2541 ACTTCCTCCAGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTT 2600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2570 ACTTCCTCCGGAAATTCAGGAACTTGTCGGAACAGTTCCAGAAGGATTCGACGAGTACTT 2629
Query 2601 TGCTGTACGGTTTCCGAAGTTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCACTGCAG 2660
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 2630 TGCTGTACGGTTTCCGAAATTGTTGATTGAAGTCTATAGAGTCATCTCTCTGCATTGTAG 2689
Query 2661 GGAAGAAGAAGTATTCAAAAAGTACTTCAAATGCAACATCATCTAAAAGACCGTTTCGCT 2720
||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2690 GGAAGAAGAAGTATTCAGAAAGTACTTCAAATGCGACATCATCTAAAAGACTGTTTCGCT 2749
Query 2721 TCCAGCACTTTATTTGTTAGTTATTGTATGTTTGTCATTGTTATATTACATAAATTAACT 2780
||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2750 TCCAGCACTTTATATGTTAGTTATTGTATGTTTGTCATTGTTATATAACATAACTTAACT 2809
Query 2781 GCTATCTAAATGTTTAACGTATAACTTAAGACTGCAACatatagtacttatatagttata 2840
| ||||||||||||||||||||||||||| |||||||||||| ||| | || | | |||
Sbjct 2810 GATATCTAAATGTTTAACGTATAACTTAA-ACTGCAACATAT-GTAGT-AT-T--T-ATA 2862
Query 2841 tatgtatatatCTCTTCATGTAAAAACTATGTTTCAAGTGACGTATTCTGCAAC 2894
|||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2863 TATGTATATATCTCTTCAAGTAA---CTATGTTTCAAGTGACGTATTCTGCAAC 2913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143828625581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5