BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480640
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17530.1 | Symbols: | Protein kinase superfamily protein | ... 2569 0.0
AT4G35500.2 | Symbols: | Protein kinase superfamily protein | ... 1247 0.0
> AT2G17530.1 | Symbols: | Protein kinase superfamily protein
| chr2:7626359-7629149 FORWARD LENGTH=2007
Length=2007
Score = 2569 bits (1391), Expect = 0.0
Identities = 1631/1741 (94%), Gaps = 39/1741 (2%)
Strand=Plus/Plus
Query 28 CTCTCTCT-TCGAGAAAATTAAAGAAAAGGGAGCTCTTTCATTCAAAGATCCAAACTTTG 86
|||||| | ||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 45 CTCTCTTTCTCGAGAAAACTAAAGAAAAGGGGGCTCTTTTATTCAAAGATCCAAACTTTG 104
Query 87 ACAATTCAAAATCC-ACACAGAACACGGATCAAGCTTTGAAATTCAGACAGAGATATGTC 145
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 105 ACAATTCAAAATCCAACATAGAACACGGATCAAGCTTTCAAATTCAGACAGAGATATGTC 164
Query 146 GTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGATGCTTACCGTAAAGG 205
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 165 GTGTTCATCCTCATCTGGATCAGAGGAAGACGATGAGGGTTTCGATGCTTACCGTAAAGG 224
Query 206 TGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAG 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TGGATATCACGCCGTTAGAATCGGAGACCAGTTTGCCGGTGGCCGTTACATTGCTCAGAG 284
Query 266 AAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACCTCTAA 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 285 AAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATGATACTCGCACTTCTAA 344
Query 326 TTATGTTGCTTTGAAGATTCAGAAGAGCGCTTTACAATTTGCTCAAGCTGCACTTCACGA 385
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 345 TTATGTTGCTTTGAAGATTCAGAAGAGCGCCTTACAATTTGCTCAAGCTGCACTTCATGA 404
Query 386 AATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGGAAATACCAAATGTGTTGTTCG 445
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||
Sbjct 405 AATCGAACTTCTTCAAGCTGCTGCTGATGGGGATCCTGAAAATACCAAGTGTGTTATTCG 464
Query 446 TCTTATTGATGACTTCAAGCACGCAGGTCCCAATGGGCAGCATTTATGCATGGTGCTTGA 505
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 465 TCTTATTGATGACTTCAAGCACGCAGGTCCCAACGGGCAGCATTTATGCATGGTGCTCGA 524
Query 506 GTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAATACAACCGTTATAAAGGGATGGAGTT 565
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 525 GTTTCTTGGCGATAGCTTGCTGCGTTTGATTAAATATAACCGTTATAAAGGGATGGAGTT 584
Query 566 GAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATTATTTGCACCGTGA 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 AAGTAAAGTGCGGGAGATATGCAAATGTATACTGACTGGTCTAGATTATTTGCACCGTGA 644
Query 626 ACTTGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTTGTTCCACCATTGA 685
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACTCGGTATGATTCACTCCGACTTAAAACCCGAAAACATTCTTCTTTGTTCCACCATTGA 704
Query 686 CCCTGCCAAGGATCCCATCAGATCCGGACTAACACCAATACTAGAAAAGCCTGAGGGTAA 745
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 705 CCCTGCCAAGGATCCTATCAGATCCGGACTAACACCGATACTAGAAAAGCCCGAGGGGAA 764
Query 746 CCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGAGGAGAGCGAAAAA 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 765 CCAAAACGGTACATCAACAATGAATCTGATTGAGAAGAAGTTGAAGAGGAGAGCAAAAAA 824
Query 806 GGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAAGTGAAACACCGAC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AGCGGCTGCTAAAATATCAGGAAGAAGAGTTTCGATAGTAGGTTTAAGTGAAACACCGAA 884
Query 866 AAAGAACAAGAGAAATTTGGATGGGATTGATATGAGATGCAAAGTTGTCGACTTTGGGAA 925
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 885 AAAGAACAAGAGAAACTTGGATGGGATTGATATGAGATGCAAAGTTGTCGACTTCGGGAA 944
Query 926 CGGGTGTTGGGCTGATAAGAAATTTGCAGAAGAAATACAAACAAGACAGTACAGAGCTCC 985
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CGGGTGTTGGGCTGATAACAAATTTGCAGAAGAAATACAAACAAGACAGTACAGAGCTCC 1004
Query 986 TGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGTCTTTCGCGTGTAC 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1005 TGAAGTAATACTTCAGTCAGGTTACTCTTACTCTGTTGATATGTGGTCTTTCGCTTGTAC 1064
Query 1046 TGCTTTCGAGCTTGCTACAGGTGATATGCTTTTCGCTCCAAAAGAGGGTAATGGTTACGG 1105
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1065 TGCTTTTGAGCTTGCTACAGGCGATATGCTTTTCGCTCCAAAAGAGGGAAATGGTTACGG 1124
Query 1106 AGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGAT 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGAAGACGAGGACCACCTTGCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGAT 1184
Query 1166 TGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGAT 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGCCATTGGAGGTGCGAGATCAAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGAT 1244
Query 1226 CCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGA 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CCGGAGATTAAAATACTGGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGA 1304
Query 1286 AGCAGAATCACGGGAATTTGCGGAATTTCTCTGCCCGATTATGGATTTTGCACCTGAGAA 1345
||||||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1305 AGCAGAAGCACGAGAATTTGCGGATTTTCTCTGCCCGATAATGGATTTTGCACCTGAGAA 1364
Query 1346 ACGACCAACTGCTCAACAATGTCTGCAACATCCATGGTTGAATCTCAGGACACAGAACAA 1405
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1365 ACGACCAACTGCACAACAATGTCTGCAACATCCATGGTTGAATCTAAGGACACAGAACAA 1424
Query 1406 TGAAGATCAAATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTTCATGTTCTTGAtt 1465
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGAAGATGATATAGAAGGTCAGATGAGTAACATGCAGATCAAAGGTTCATGTTCTTGATT 1484
Query 1466 ttttt--GCTTACATATGATATAGAACTGctctctctctcttttttgggttcattctttg 1523
||||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||
Sbjct 1485 TTTTTTTGCTTACAAATGATATAGAACTGCTCTCTCTCTCTTTTT-GG-TTAATTCTTTG 1542
Query 1524 gttcgtt-cca----a-t-ttg--aa-----tattt-tt--gttctttttt-ttt-ttGA 1564
||||||| ||| | | ||| || ||||| || |||||||||| ||| ||
Sbjct 1543 GTTCGTTTCCATTTGAATATTGTTAAAAGAATATTTGTTTTGTTCTTTTTTCTTTCTTTT 1602
Query 1565 ACTTTG----G-A-GATATGATCAATGACTAACAATCGTTTTCATATAAACATATAATAT 1618
|||| | | |||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1603 TTTTTGTCTTGGAAGATATGATCAATGACTAACAATGGGTTTCATATAAACATATAATGT 1662
Query 1619 AGCACATTGCGAATGTATGATTTG-AGTT-CAAAGAGAGTGATATCAAACTAAGTTTTAA 1676
|| || ||| | | | | | | ||| | | | |||||||||||||| || ||||||
Sbjct 1663 AGTTCACTGCTC-TCTTTTAGTGGTAGTGACTA-GTGAGTGATATCAAACCAAATTTTAA 1720
Query 1677 TTCCGATAATTCTTATTACTTTGTCttttttt-ttttCTTAC-AA-TA-AATTACAAGAA 1732
||||||| |||||||||| ||||||||||||| |||| || || | |||||||||||
Sbjct 1721 TTCCGATTATTCTTATTAGTTTGTCTTTTTTTGTTTTTTTTTTAACTCTAATTACAAGAA 1780
Query 1733 A 1733
|
Sbjct 1781 A 1781
Score = 195 bits (105), Expect = 2e-48
Identities = 121/129 (94%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 1784 GGCCAAGGCTTGATTACTCAGTTGTGATCGTTACTCTTCATATGGTTAAGCGAGAGAGAT 1843
||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 1878 GGCCAAGGCTTGATTTCTCAGTTGTGATTGTTACTCAACATATGGTTAAGCCAGAGAGAT 1937
Query 1844 GGAAGTATTACCAAATCAAGAACACAGAATGGGAGTTCCTAAATGTGGTCGAAGCCAAAT 1903
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1938 GGAAGTATTACCAAATCAAGAACACAGAATGGGAGTTCCTAGATGTGGTCGAAGCCAAAT 1997
Query 1904 CTGTCTTTC 1912
||| ||||
Sbjct 1998 TTGTGTTTC 2006
> AT4G35500.2 | Symbols: | Protein kinase superfamily protein
| chr4:16857353-16859603 FORWARD LENGTH=1638
Length=1638
Score = 1247 bits (675), Expect = 0.0
Identities = 1137/1353 (84%), Gaps = 60/1353 (4%)
Strand=Plus/Plus
Query 131 AGACAGAGATATGTCGTGTTCATCCTCATCTGGATCAGATGAAGACGATGAGGGTTTCGA 190
||| ||||||||||| |||||||| || || |||||||| | ||| || |||||||||||
Sbjct 113 AGATAGAGATATGTCTTGTTCATCTTCTTCCGGATCAGAAGGAGAAGAAGAGGGTTTCGA 172
Query 191 TGCTTACCGTAAAGGTGGATATCACGCCGTTAGAATCGGAGA-CCAGTTTGCCGGTGGCC 249
|||||||||||||||||| ||||||||||| || ||||| || || ||| ||||||| |
Sbjct 173 TGCTTACCGTAAAGGTGGTTATCACGCCGTCAGGATCGGCGATCC-TTTTTCCGGTGGTC 231
Query 250 GTTACATTGCTCAGAGAAAGCTTGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCCTATG 309
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 232 GTTACATCGCTCAGAGAAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCCTACG 291
Query 310 ATACTCGCACCTCTAATTATGTTGCTTTG-AAGATTCAGAAGAGCGCTTT-----ACAAT 363
|||| | ||||||||| | | |||||||| | | || | | | |||| |||||
Sbjct 292 ATACGCTCACCTCTAA-TGTTTTGCTTTGTATG-TTTTTATG-TCTCTTTGCACAACAAT 348
Query 364 TTGCTCAAGCTGCACTTCACGAAATCGAACTTC-TTCAAGCTGCTGCTGATGGGGATCCT 422
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 349 TTGCTCAAGCTGCACTTCACGAAATCGAATTTCTTTC-AGCTGCTGCTGATGGGGAT-CT 406
Query 423 GGA-AATACCAAATGTGTTGTTCGTCTTATTGATGACTTCAAGCA-CGCAGGTCCCAATG 480
|| || || ||||||||||||||||||||||| | |||||||| | ||||| ||||
Sbjct 407 CGACAAGACGAAATGTGTTGTTCGTCTTATTGACCATTTCAAGCATAG-TGGTCCAAATG 465
Query 481 GGCAGCATTTATGCATGGTGCTTGAGTTTCTTGGCGATAGCTTGCTGCGTTTGATCAAAT 540
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||
Sbjct 466 GGCAGCATTTATGCATGGTGCTTGAGTTTCTCGGCGATAGCTTGCTCCGTTTAATCAGAT 525
Query 541 ACAACC-GTTATAAAGGGATGGAGTTGAGTAAAGTGCGGGAGATATGCAAATGTATACTG 599
|||||| | || ||||| || | ||| |||||| |||||||| |||| ||||||||||
Sbjct 526 ACAACCAG-TACAAAGGTCTGAAACTGAATAAAGTCCGGGAGATTTGCAGATGTATACTG 584
Query 600 ACTGGTCTAGATTATTTGCACCGTGAACTTGGTATGATTCACTCCGACTTAAAACCCGAA 659
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 585 ACTGGTTTAGATTATTTGCACCGTGAGCTCGGTATGATTCACTCCGACTTAAAACCTGAA 644
Query 660 AACATTCTTCTTTGTTCCACCATTGACCCTGCCAAGGATCCCATCAGATCCGGACTAACA 719
||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| ||
Sbjct 645 AACATTCTTCTTTGTTCCACCATTGACCCTGCCAAAGATCCCGTTAGATCTGGACTCACC 704
Query 720 CCAATACTAGAAAAGCCTGAGGGTAAC-CAAAACGGTA-C--ATCAACAATGAATCTGAT 775
||| || ||||||| || ||||| ||| |||| |||| | ||||||||||||||||||
Sbjct 705 CCACTATTAGAAAAACCAGAGGGAAACGCAAA-CGGTGGCGCATCAACAATGAATCTGAT 763
Query 776 TGAGAAGAAGTTGAAGAGGAGAGCGAAAA-AGGCGGCTGCTAAAATATCAGGAAGAAGAG 834
||||||||| | ||||| |||||||||| || ||| |||||||||||||| ||||||||
Sbjct 764 TGAGAAGAAACTAAAGAGAAGAGCGAAAAGAG-CGGTTGCTAAAATATCAGAAAGAAGAG 822
Query 835 TTTCGATAGT-A--GGTTTAAGT-GAAACACCGACAAA-GAACAAGAGAAATTTGGATGG 889
| || || || | ||| ||| | | || ||| ||| | | || | || | | |||||
Sbjct 823 TCTCAATGGTTACAGGTG-AAGAAGCATCATCGA-AAACGGA-AA-A-AAGTCTAGATGG 877
Query 890 GATTGATATGAGATGCAAAGTTGTCGACTTTGGGAACGGGTGTTGGGCTGATAAGAAA-T 948
||||||||||||||||||||| || |||||||| |||| |||||||||||||| | | |
Sbjct 878 GATTGATATGAGATGCAAAGTGGTTGACTTTGGTAACGCTTGTTGGGCTGATAA-ACAGT 936
Query 949 TTGCAGAAGAAATACAAACAAGACAGTA-CAGAGCTCCTGAAGTAATACTTCAGTCAGGT 1007
|||| ||||| ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 937 TTGCTGAAGAGATACAAACAAGACAGTATC-GAGCTCCTGAAGTAATACTAAAGTCAGGA 995
Query 1008 TACTCTTACTCTGTTGATATGTGGTCTTTCGCGT-GTACTGCTTTCGAGCTTG-CTACAG 1065
||||||| ||||||||||||||||||||| | || |||| ||||||||||||| | ||||
Sbjct 996 TACTCTTTCTCTGTTGATATGTGGTCTTTTG-GTTGTACGGCTTTCGAGCTTGTC-ACAG 1053
Query 1066 GTGATATGCT-TTTCGCTCCAAAAGAGGGTAATGGTTACGGAGAAGACGAGGACCACCTT 1124
| |||||||| ||| || || ||||| || |||||||| || ||||||||||| ||||||
Sbjct 1054 GAGATATGCTATTT-GCACCTAAAGATGGAAATGGTTATGGGGAAGACGAGGATCACCTT 1112
Query 1125 GCTCTTATGATGGAACTCTTAGGAAAAATGCCTCGAAAGATTGCCATTGGAGGTGCGAGA 1184
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1113 GCTCTTATGATGGAACTCCTAGGAAAGATGCCTCGAAAGATTGCCATTGGAGGGGCGAAA 1172
Query 1185 TC-AAAGGATTACTTTGACAGACACGGCGACTTGAAGAGGATCCGGA-GATTAAAATACT 1242
|| |||| | ||||||||||||||||| ||||| ||||| ||||| | | || ||||| |
Sbjct 1173 TCGAAAG-ACTACTTTGACAGACACGGGGACTTAAAGAGAATCCG-ACGGTTGAAATATT 1230
Query 1243 GGCCACTCGACCGTTTACTGATTGATAAATACAAGCTTCCAGAAGCAGAATCACGGGAAT 1302
||||||| || || || |||||||||||||| |||||||| ||||||||| || ||| |
Sbjct 1231 GGCCACTTGATCGCTTGCTGATTGATAAATATAAGCTTCCGGAAGCAGAAGCAAAGGAGT 1290
Query 1303 TTGCGGAATTTCT--CTGCCCGATTATGGATTTTGCACCTGAGAAACGACCAACTGCTCA 1360
|||| || ||||| || || |||| | || ||||| || ||||||||||||||||||||
Sbjct 1291 TTGCTGAGTTTCTGACT-CC-GATTCTTGAGTTTGCGCCGGAGAAACGACCAACTGCTCA 1348
Query 1361 ACAATGTCT-GCAACATCCATGGTTGAATCTCAGGACACAGAACAATGAAGATCAAAT-- 1417
||| || || | | ||||||||| ||||| | | ||||||||| ||| ||| ||||
Sbjct 1349 ACAGTG-CTTGGATCATCCATGGATGAATGTAACAACACAGAACGATGCAGA--AAATGT 1405
Query 1418 AGAAGGTCAGATGAGTAACATGCAGATCAAAGG 1450
||| | || |||| ||| |||| ||||||||
Sbjct 1406 AGATGACCAAATGAACAACTTGCATATCAAAGG 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94678227870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5