BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480644
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17540.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1419 0.0
> AT2G17540.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G35510.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:7630420-7631898 REVERSE LENGTH=1268
Length=1268
Score = 1419 bits (768), Expect = 0.0
Identities = 1128/1285 (88%), Gaps = 91/1285 (7%)
Strand=Plus/Plus
Query 13 AACAAATCTCCTCTC-TATCTATCTT-TTCCCCATTTCTC--AAAACCCTAATTTCTCCA 68
||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1 AACAAATCTCCTCTCTTCTCTATCTTCTTCCCCATTTCTCTGAAAACCCTAATTTCTCCA 60
Query 69 TCTCTC-ATCTCTGTGTGTTTGTATCTCTCATCTCTGTTTGAGAGATCATAAGGTAACTT 127
|||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCTCTCAATCTCTCTGTGTTTGTATCTCTCATCTCTGTTTGAGAGATGATAAGGTAACTT 120
Query 128 CAAAGCAGCCTCGTGAATTCATCTTGTAATTTCAG----------GT-A-CTTCATTT-G 174
||||||| ||||||||||||||||||||||||||| || | | | |||| |
Sbjct 121 CAAAGCATCCTCGTGAATTCATCTTGTAATTTCAGATTCTATAATGTGATCCTGATTTAG 180
Query 175 G-----AA--C-----AAATGGCGACAAATGCGAGCCTTGAATCCGATTCGCTTCTACCT 222
| || | ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 181 GATTTTAATTCGAGATAAATGGCGACAAATGCGTGCCTTGAGTCCGATTCGCTTCTACCT 240
Query 223 CCACGGAAGCGTTTACTCGCCGGATTCAAGAAACAGAACTCGAAAAGCGGCAATGAATCG 282
|||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||
Sbjct 241 CCACGGAAGCGTTTACTCGCCGGATTCAAGAACCAGAACTCGAGAATCAGCAATGAATCT 300
Query 283 CCGAGCCCTCCTTTCGCTTCTTC-T--TCTTCTATTACAACTTCAAATGGTTCCTCTGCT 339
||||| ||||||||||||||||| | || |||| |||||||||||||||||||||||||
Sbjct 301 CCGAGTCCTCCTTTCGCTTCTTCGTCCTCGTCTACTACAACTTCAAATGGTTCCTCTGCT 360
Query 340 TCAACAGATGTGCAGACTCATCTAGGCCATCTATTGA-CTTCCCAACTTAATGACCAGAC 398
||| ||| |||||| ||||| | |||| | || | | | ||| |||||||||||
Sbjct 361 TCAGCAGTTGTGCACACTCA--T----CATC--TCGACCAT--CTACTCAATGACCAGAC 410
Query 399 TCGGTCTCCGGAAGAGCTAGCTCAGGCGTC-AAAGGCAACCGCTGCTTTAGCGGTTAAGG 457
|||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 411 TCGGTCCCCGGAAGAGCTTGCTCAGGCGTCGAAA-GCAACCGCTGCTTTAGCGGTTAAGG 469
Query 458 TTGCAAAGGCGGCGAGAGCTACTGCTAATGAGAAGGCCATCATTGCTTCAAAAGCAGTGG 517
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 TTGCAAAGGCGGCGAGAGCTACTGCTAATGAGAAGGCCATCATTGCTTCTAAAGCAGTGG 529
Query 518 CGGCAGCGAA-AAGTGCGTTGGAATTGTTCGCTTCTTTTCCCGT---TGAGGCGGTTTCT 573
| ||||| || || ||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 530 CTGCAGCCAAGAA-TGCGTTGGAATTGTTTGCTTCTTTTCCCGCAGCTGAGACGGTTTCT 588
Query 574 TGTAAGGAGAGGTCTAGGTTGAATCGAGCTATAAACAATTCCCCTAGAGTCTTGACGGAT 633
||||| |||| ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 589 TGTAA--AGAGC-CTAGGTTGATTCGAGCTATAAACAATTCTCCTAGAGTCTTGACGGAT 645
Query 634 TGTTCTGGTCACAGAAACAAGAAGCAAAAGAC-CGTAACTAGTACTATGTACGATGGGAA 692
|||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 646 TGTTCTGGTCACAGAAACAAGAAGCAAAAGACTC-TGACTAGTACTATGAACGATGGGAA 704
Query 693 TGATGTTGCTGGTGTTGTAGATTCAGACAACAGAACCAGAGTAAACGGGAAGCTGCTCTT 752
|||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 705 TGATGTTGCTGGTGTTGTGGATTCAGATGACGGAACCAGAGTAAACGGGAAGCTGCTCTT 764
Query 753 ATGCGATAACGCTCTGAAGGAGAAAACAGGGGGAGAGAGTAGCTCATTGGGGAAAAGAAG 812
|||||||||| | || ||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 765 ATGCGATAACACGCTAAAGGAGAAAACAGAGGAAGAGAGTAGCTCATTAGGGAAAAGAAG 824
Query 813 AGGAAGAGTAAAGTTAAAGAAGTTACCTTTGAGCATGTGTGCCT-CTAAAGATCAAGAAA 871
||||||||| | || | | ||||||||||||||||||| | || ||||||||||
Sbjct 825 AGGAAGAGT---G--AA-GC--TC-CCTTTGAGCATGTGTGCCTAC-AAGGATCAAGAAA 874
Query 872 ACGGTATCACATTAGCGGAAAACAATGTAAGCGTAAGTAAGCCGGAAGGTTCTAATGGTG 931
||||||||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||
Sbjct 875 ACGGTATCACATTAGAGGAAAACAATCTAAGTGTAAGTAAGTCGGAAGGTTATAATGGTG 934
Query 932 GTGTGGGTCAGGTCATAGAAGGACCATCATGGAAGTGTCAGGACCTCAAGTCACCGGAAT 991
|||||| |||||| |||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 935 GTGTGGCTCAGGTTATAGAACGACCATCATGGAAGTGTCAGGACTTAAAGTCACCGGAAT 994
Query 992 GTGTGAAGCAGAACAAAGTTGTACGTTCATAGT------A----------C-C-TAAAAG 1033
||||||||||||||||||||||||||||||||| | | | ||||||
Sbjct 995 GTGTGAAGCAGAACAAAGTTGTACGTTCATAGTCTTCTTATATGTATTTACACCTAAAAG 1054
Query 1034 AGGTAAGAAGGTGCAGATTCAACAGCATTGCCATTTTCAGTAGAATCttaatgttgttta 1093
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1055 AGGTAAGAAGGTGCAGATTCAACAGCATTGTCATTTTCAGTACAATCTTAATGTTGTTTA 1114
Query 1094 tttttatcttgttttgcttttttgggtaatgtgtttgaatttatgttacttgtatatttt 1153
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1115 TTTTTATCTTGTTTTGCTTTTTTGGGTAATGTGTTTGATTTTATGTT----GTATATTTT 1170
Query 1154 gGGAATAATATCTAGATACATAGATTTTATATATATGTATGTTGGTTGTTGAATCATTGT 1213
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 1171 GGGAATAATATCTAGATACATAGATTTTGTATAT--GTATGTTGGTTGTTTAATCAGTGT 1228
Query 1214 AAGTGTTGTTGTTAAAGTGATGACT 1238
|||||||||| ||||||||||||||
Sbjct 1229 AAGTGTTGTTATTAAAGTGATGACT 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5