BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480651
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17570.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1563 0.0
> AT2G17570.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr2:7644053-7646254 FORWARD LENGTH=1413
Length=1413
Score = 1563 bits (846), Expect = 0.0
Identities = 1071/1171 (91%), Gaps = 49/1171 (4%)
Strand=Plus/Plus
Query 26 GGAATCTCAAATGGCTGAACTTCCAGGTCAAATAAGACGTATGA-GCGGTGGAATTAGTC 84
|||||||||||||||||||||||| ||||||||||||| ||| | ||||| |||| ||||
Sbjct 235 GGAATCTCAAATGGCTGAACTTCCTGGTCAAATAAGACATAT-AGGCGGTCGAATGAGTC 293
Query 85 AATTGATAGAGCAGATATACGGGTTTTCGAGAAGATGTTTGTTTCGGGTCATATCTATGG 144
|| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 294 AACTGCTAGAGCAGATATATGGGTTTTCGAGAAGATCTTTGTTTCGGGTCATATCTATGG 353
Query 145 GTCCTATACCTAGTCATCTCGCCTTTATCATGGATGGAAATAGGAGATATGCAAAAAAGC 204
||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||| |||
Sbjct 354 GTCCTATACCTTGTCATATTGCCTTTATCATGGATGGAAATCGGAGATATGCAAAGAAGT 413
Query 205 ACGGTCTAGAAGATGGGTCTGGTCATC-AAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 263
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 414 GTGGTCTTTTAGATGGGTCTGGTCA-CAAAGCGGGGTTTTCTGCGCTTATGTCGATGCTG 472
Query 264 CAGTACTGCTACGAGCTAGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 323
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CAATACTGCTACGAGCTGGGTATCAAGTATGTAACGATATACGCATTTAGCATAGATAAT 532
Query 324 TTTAGAAGACAACCTGAGGAGGTTCAGTCTCTAATGGATTTGATGTTGGAAAAGATAAAG 383
||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 533 TTTAGAAGAAAACCTGAGGAGGTTGAGTCTGTAATGGATTTGATGCTGGAAAAGATAAAG 592
Query 384 TCTTTGCTTGAGAAAGAGAGTATCGTGCATCAGTATGGGATTCGGGTCTATTTTATTGGT 443
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 593 TCTTTGCTTGAAAAAGAGAGTATTGTGCATCAGTATGGGATTCGGGTCTATTTTATCGGT 652
Query 444 AACTTGGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCCGAAAAAGTCATGAAGGCCACA 503
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 653 AACTTAGCGCTTCTAAATGACCAAGTGAGAGCTGCTGCAGAAAAAGTCATGAAAGCCACA 712
Query 504 GCTAAGAATAGTCGGGTAGTGCTTCTCATCTGCATTGCCTATAACTCGACAAATGAGATC 563
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 713 GCTAAGAATAGTCGGGTAGTGCTTCTCATTTGCATTGCCTATAACTCGACAGATGAGATC 772
Query 564 GTACAAGCTGTCAAGAAATCTTGTATTAACACGTCAGACAATATGGAAGCATCTGGAAAC 623
||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||
Sbjct 773 GTACAAGCTGTCAAGAAATCTTGTATTAACAAGTCAGACAATATTGAAGCATCT---AAT 829
Query 624 TATAAACACGAGGATAGAGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 683
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TATAAACACGAGGATAGCGATAGTGATATAGAAGGAACAGATATGGAGAACCAAGAGAAG 889
Query 684 AGGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 743
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGATACAGTTGGTGGATATTGAGGAGAATATGCAGATGAGCGTGGCGCCGAATCCTGAT 949
Query 744 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTTTTATGGCAAACAGGT 803
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 950 ATACTCATCAGGAGTTCAGGAGAGACGAGGCTGAGCAATTTTCTCTTATGGCAAACAGGT 1009
Query 804 AATACCCAGCTCTTCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTCTGAGGCATCTGCTC 863
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1010 AATACCCAGCTCTGCTCTCCGGCTGCTCTGTGGCCTGAGATTGGTTTGAGGCATCTGCTC 1069
Query 864 TGGGCTGTATTGAACTTCCAAAGAAATCATTCATACTTGGAGAAGAGGAAGAAACAATTG 923
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1070 TGGGCTATATTGAACTTCCAAAGAAATCATTCATACTTGGAAAAGAGGAAGAAACAATTA 1129
Query 924 TGATTGTCCTGAA-G-----T-G--AAGGATATACAAAAGCTCTCTTTTCTTTTTGGCTT 974
|||||||| |||| | | | |||||||||||||||||||||| ||| ||||||||
Sbjct 1130 TGATTGTCTTGAAAGGAGACTAGTGAAGGATATACAAAAGCTCTCTTCTCTATTTGGCTT 1189
Query 975 TGTAATGTGATGTGATGCTCTTGTGG-------------G-A---TT---A---CATAGA 1011
|||||||||||||||||||||||||| | | || | ||||||
Sbjct 1190 TGTAATGTGATGTGATGCTCTTGTGGTATACTATCAAAAGGAAACTTGGGATTACATAGA 1249
Query 1012 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAACCCTTAACCAA 1071
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1250 ACAAGCAATGTATTTTACACACGAACTCATTTGAGTTTTTCTTTATGAATCCTTAACCAA 1309
Query 1072 AAGTCC-----TCC-CT--AAAGACATCTTACTTCCTGTTCTGTTCTTGTAAGATCCAGA 1123
|| ||| ||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1310 AACTCCAAAAGTCCTCTCTAAAGACATCTTACTTCCTGTTCTGT-CTTGTAAGATCCAGA 1368
Query 1124 CTCTTTAAGATTTGTGTTTCACGAGTGTTTT 1154
|||| || ||||||||||||||||||||||
Sbjct 1369 ATCTT-AACATTTGTGTTTCACGAGTGTTTT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5