BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480657
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17650.1 | Symbols: | AMP-dependent synthetase and ligase f... 2820 0.0
> AT2G17650.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr2:7671016-7673036 FORWARD LENGTH=1937
Length=1937
Score = 2820 bits (1527), Expect = 0.0
Identities = 1797/1924 (93%), Gaps = 31/1924 (2%)
Strand=Plus/Plus
Query 1 CCAAATCAAAGTGTTAACCATGAGATTCTTGTTATCCAAAAGAGCATTCAAAATCTTC-A 59
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 7 CCAAATCAAAGTGTTAACCATGAGATTCTTGTTAACCAAAAGAGCATTCAGAATCTTCAA 66
Query 60 CTCCACGTTTCCAGAGTCTGTGGTTCACTTATTCTCCCTTCTCCTCAA---C-----CC- 110
| |||||||||||||| |||||||| |||| ||||||||||||||||| | ||
Sbjct 67 C-CCACGTTTCCAGAGACTGTGGTTAACTTCTTCTCCCTTCTCCTCAACCTCAAATTCCG 125
Query 111 -C-GA-ATCCCGGCGATTCCGAGCCGGAATCATGGAGAACTATGGAGGGTCTTCTCCGAT 167
| || ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 126 GCGGATTTCCCGACGATTCCGAGCCGGAATCATGGAGAACTATAGAGGGTCTTCTCCGTT 185
Query 168 CCCCTGCAAATTTCTCTCCTTTATCTCCAATCACGTTCTTGGAACGATCCGCAAAAGTTT 227
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 186 CCCCTGCAAATTTCTCTCCTTTATCTCCAATCACGTTCTTGGAGCGATCCGCTAAGGTTT 245
Query 228 ACAGAGACAGAACCTCTCTTGTGTTTGGTTCCGTTAAACATACTTGGTTCCAAACTTATC 287
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 ACAGAGACAGAACCTCTCTTGTGTTTGGTTCCGTTAAACACACTTGGTTCCAAACTTATC 305
Query 288 AACGTTGTCTCCGTCTTGCTTCTGCTCTTACCCACCTCGGAATTTCTCGTGGCGATGTGG 347
||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 306 AACGTTGTCTCCGTCTTGCCTCTGCTCTTACCAATCTCGGAATCTCTCGTGGCGATGTGG 365
Query 348 TTGCAGCTTTGGCACCGAATGTTCCAGCAATGCATGAGCTTCATTTCGCTGTTCCAATGG 407
|||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 366 TTGCAGCTTTAGCTCCGAATGTTCCAGCTATGCATGAGCTTCATTTCGCTGTTCCTATGG 425
Query 408 CTGGTTTGATTCTTTGTCCGCTTAATACTCGACTTGATCCTTCCACATTGTCGGTTTTGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTGGTTTGATTCTTTGTCCGCTTAATACTCGACTTGATCCTTCCACATTGTCGGTTTTGT 485
Query 468 TAGCACATTCGGAGGCCAAAATCCTCTTTGTTGATCACCAGTTACTTGAGATTGCTCATG 527
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 TAGCACACTCCGAGGCCAAAATCCTCTTTGTTGATCATCAGTTACTTGAGATTGCTCATG 545
Query 528 GAGCTCTTGATCTTCTTGCTAAATCAGATAGAACAAGAAAAAGTTTGAAGCTTGTGTTGA 587
|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 546 GAGCTCTTGATCTTCTTGCTAAATCAGATAAAACTAGAAAAAGTCTGAAGCTTGTGTTGA 605
Query 588 TCTCTCAGTCTAATGATGATG--G-T--T-ATGA---TAGCTCATCTAGCTTTGCGTCAA 638
||||||||||||||||||||| | | | |||| ||||||||||| |||||| ||||
Sbjct 606 TCTCTCAGTCTAATGATGATGATGATAGTGATGAAGATAGCTCATCTACCTTTGCTTCAA 665
Query 639 AGTACTCGTTTGATTACGAATATGAAACTCTGCTTAAATCCGGAAATA-CTGAATTCGAG 697
||||||| |||||||||||||||||||||||||||||||||||| ||| | || || |||
Sbjct 666 AGTACTCTTTTGATTACGAATATGAAACTCTGCTTAAATCCGGAGATAGC-GAGTTTGAG 724
Query 698 ATAATCAAACCGAGATGCGAATGGGATCCTATTAGTATAAACTACACTTCAGGAACGACT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 725 ATAATCAAACCGAGATGCGAATGGGATCCTATTAGTATAAACTACACTTCAGGGACGACT 784
Query 758 TCGAGACCTAAAGGTGTAGTGTATAGCCATAGAGGAGCTTATCTCAATTCTCTTGCTACA 817
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TCGAGACCTAAGGGTGTAGTGTATAGCCATAGAGGAGCTTATCTCAATTCTCTTGCTACA 844
Query 818 GTTTTTCTTCACCAGATGTCTGTTTATCCAGTTTATTTATGGACTGTGCCGATGTTTCAC 877
|| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 845 GTCTTTCTTCACCAGATGTCTGTTTATCCGGTGTATTTATGGACAGTGCCGATGTTTCAC 904
Query 878 TGTAACGGATGGTGCCTTATTTGGGGAGTAGCAGCTCAAGGTGGTACCAATATCTGCCTC 937
|||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 905 TGTAACGGATGGTGTCTTGTTTGGGGAGTAGCAGCTCAAGGTGGTACTAATATCTGTCTC 964
Query 938 AGGAAAGTCTCTCCTAAGTTGATCTTTAAGAACATTGCTATGCATAAAGTGACTCACATG 997
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AGGAAAGTCTCTCCTAAGATGATCTTTAAGAACATTGCTATGCATAAAGTGACTCACATG 1024
Query 998 GGAGGAGCCCCTACGGT-TCTGAACATGATTGTGAACTCTCCTGTGACCGAACATAAACC 1056
||||||||||| || || | |||| ||||||||||||| | ||||||| |||||||||||
Sbjct 1025 GGAGGAGCCCCAACTGTGT-TGAATATGATTGTGAACTATACTGTGACTGAACATAAACC 1083
Query 1057 GCTGCCTCACAGGGTTGAGATCATGACAGGTGGGTCACCACCTC-AGCCACAGATACTCG 1115
||| ||||||||||||||||||||||||||||||||||| |||| | || ||||| || |
Sbjct 1084 GCTTCCTCACAGGGTTGAGATCATGACAGGTGGGTCACCGCCTCTA-CCGCAGATCCTGG 1142
Query 1116 CAAAGATGGAAGAATTAGGTTTCAATGTGTCTCATCTATACGGTTTGACAGAGACATACG 1175
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1143 CTAAGATGGAAGAATTAGGTTTCAATGTGTCTCATCTTTATGGTTTGACAGAGACATACG 1202
Query 1176 GTCCAGGGACACACTGCGTGTGGAAACCTGAATGGGATTCTCTTTCGTTGGAGGAGAGAA 1235
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1203 GTCCAGGGACACATTGCGTGTGGAAACCTGAATGGGATTCACTTTCGTTGGAGGAGAGAA 1262
Query 1236 CTAAGTTGAAGGCTAGACAAGGAGTGCAGCATTTGGGTCTAGAAGGGCTCGATGTGAAAG 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CTAAGTTGAAGGCTAGACAAGGAGTGCAGCATTTGGGTCTAGAAGGGCTCGATGTGAAAG 1322
Query 1296 ATCCGGTGACAATGGAGACTGTCCCTGACGATGGTGTAACCATGGGTGAGGTTATGTTCA 1355
||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1323 ATCCGCTGACAATGGAGACTGTCCCTGATGATGGTTTAACCATGGGTGAGGTTATGTTCA 1382
Query 1356 GAGGAAACACTGTGATGAGTGGATATTTCAAGGACTTAGAGGCAACACGAAAAGCTTTCG 1415
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1383 GAGGAAACACTGTGATGAGTGGATATTTCAAGGACATAGAGGCAACACGAAAAGCTTTCG 1442
Query 1416 AAGGAGATTGGTTCCATAGTGGTGATCTCGCTGTTAAGCATCCGGACGGGTACATAGAAA 1475
| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1443 AGGGAGATTGGTTCCACAGTGGTGATCTCGCTGTTAAGTATCCAGACGGGTACATAGAGA 1502
Query 1476 TAAAAGATCGGTTAAAAGATGTGATAATCTCAGGAGGAGAAAACATAAGCTCGGTGGAGG 1535
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1503 TAAAAGACCGGTTAAAAGATGTGATCATCTCAGGAGGAGAAAACATAAGCTCAGTGGAGG 1562
Query 1536 TCGAAAGTGTTTTGTGTAGCCATCAAGCGGTTCTTGAAGCCGCTGTTGTGGCACGTCCGG 1595
| || || |||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1563 TTGAGAGAGTTTTGTGCAGCCATCAAGCGGTTCTTGAAGCTGCTGTTGTAGCACGTCCAG 1622
Query 1596 ATAATCATTGGGGACAGACTCCTTGCGGGTTCGTGAAGCTGAAAGACGGGTTTGATACCA 1655
|| |||| |||||||||||||||||||| || || ||||||||||| || ||||||||||
Sbjct 1623 ATCATCACTGGGGACAGACTCCTTGCGGTTTTGTAAAGCTGAAAGAAGGATTTGATACCA 1682
Query 1656 TCAAACCCGAGGAGATTATCGGGTTCTGTAGAGATCATTTGCCTCACTACATGGCTCCAA 1715
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1683 TCAAACCCGAGGAGATTATCGGGTTCTGTCGAGATCATTTGCCGCATTACATGGCTCCAA 1742
Query 1716 AGACTATTGTTTTTGGGGACATACCTAAAACCTCGACAGGGAAAGTACAAAAATATCTTC 1775
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1743 AGACTATAGTTTTCGGGGACATACCTAAAACCTCGACGGGGAAAGTACAAAAGTATCTTC 1802
Query 1776 TGAGGAAGAAAGCTGATGAAATGGGCAGCTTGTAATCGCCATGTAAGAAACAAAAAAGCT 1835
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1803 TGAGGAAGAAAGCTGATGAAATGGGTAGCTTGTAATCGCCATGTAAGAAACAAAAAAGCT 1862
Query 1836 TGGTCTCTAGTTCATGTGTGTAT--AAGGAAACAAAGATCAGAGAATCATAAAACCACCG 1893
| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1863 TAGTCTCTGGTTCATGTGTGTATGTAAGGAAACAAAGATCAGAGAATCATAAAACCACCG 1922
Query 1894 CGTG 1897
||||
Sbjct 1923 CGTG 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93925219695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5