BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480659
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2265 0.0
> AT2G17670.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:7674351-7676157 FORWARD LENGTH=1807
Length=1807
Score = 2265 bits (1226), Expect = 0.0
Identities = 1385/1462 (95%), Gaps = 9/1462 (1%)
Strand=Plus/Plus
Query 39 AAAAAATGGGGAAAGTTCCATCGTCGTTTCG-CGCTATGCCGGCGAACTTATTGGTCA-A 96
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
Sbjct 65 AAAAAATGGGGAAAGTTCCGTCGTCGTTTCGTAG-TATGCCGGCGAACTTATTGGTCAGA 123
Query 97 AAAACCAACACCATCTCCTCCAGCGCCGCCGCGTGATTTTCGCAACAGAACCGCCGT--G 154
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 124 AAAA-CAACACCATCTCCTCCAGCGCCGCCGCGAGATTTTCGCAACAGAACCGCCGTGGG 182
Query 155 A-GAGATTCAACTAAACTTCCCGAGAATACTCAAGCCCCTCGCGAGCCCTCCTTGAGGAA 213
| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 183 AGGAGATTCAGCCAAACTTCCCCAGAATACTCAAGCCCCTCGCGAGCCCTCCTTGAGGAA 242
Query 214 CCCTTTCAAGTCACCAAATCTCTCAGACGCCAAAAGTCTCTTCAATTCAATCGCCGCCAC 273
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 243 TCCATTCAAGTCACCAAATCTCTCAGACGCTAAAAGCCTCTTCAATTCAATCGCCGCCAC 302
Query 274 TTCAAGAATCCCACTCGATCTCAAATTCCACAACTCTGTTCTTCAATCCTACGCTTCAAT 333
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 303 TTCACGAATCCCACTCGATCTCAAGTTCCACAACTCTGTTCTTCAATCATACGGTTCAAT 362
Query 334 CGCCGCCGTTGACGATACGGTGAAGTTGTTTCAGCATATTTTGAAATCTCAGCCTAAGTT 393
||||| ||| ||||||||||||| | |||||||||||||||||||| |||||||| ||
Sbjct 363 CGCCGTCGTCAACGATACGGTGAAACTCTTTCAGCATATTTTGAAATCGCAGCCTAATTT 422
Query 394 CAGGCCGGGACGTTCTACGTTCCTTATCTTGCTTTCACATGCTTGTAGAGCTCCTGATTC 453
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CAGGCCGGGACGTTCAACGTTCCTTATCTTGCTTTCACATGCTTGTAGAGCTCCTGATTC 482
Query 454 ATCGATTTCGAATGTTCATAGAGTTCTTAATCTCATGGTGAATAATGGTTTAGAGCCTGA 513
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 483 GTCGATTTCGAATGTTCATAGAGTTCTTAATCTCATGGTTAATAATGGTTTAGAGCCTGA 542
Query 514 TCAAGTAACAACCGATATCGCGGTTCGGTCTCTTTGCGAAACCGGTCGGGTTGATGAAGC 573
||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 543 TCAAGTAACTACCGATATCGCGGTGAGGTCTCTTTGCGAAACGGGTCGGGTTGATGAAGC 602
Query 574 TAAGGATTTGATGAAGGAGCTGACGGAGAAACATTCCCCTCCGGATACATATACTTATAA 633
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 603 TAAGGATTTGATGAAGGAGCTCACTGAGAAACACTCTCCTCCGGATACATATACTTATAA 662
Query 634 CTTTCTACTGAAGCATTTGTGCAAATGCAAAGATCTACATGTTGTTTATGAGTTTGTTGA 693
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 663 CTTTCTACTGAAGCATTTGTGCAAATGCAAAGATCTTCATGTTGTTTATGAGTTTGTTGA 722
Query 694 TGAGATGAGGGATGATTTCGATGTGAAGCCGGACCTTGTTAGCTTCACTATCTTGATTGA 753
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 723 TGAGATGAGAGATGATTTCGATGTTAAGCCGGATCTTGTTAGCTTCACTATCTTGATTGA 782
Query 754 TAATGTGTGTAACTCTAAGAACTTGAGGGAGGCAATGTATCTAGTTAGTAAGTTAGGTAA 813
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TAATGTTTGTAACTCTAAGAACTTGAGGGAGGCAATGTATCTAGTTAGTAAGTTAGGTAA 842
Query 814 TGCTGGGTTTAAGCCGGATTGTTTCCTCTATAACACCATTATGAAAGGTTTTTGCACACT 873
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 843 TGCTGGGTTTAAGCCGGATTGTTTCCTCTATAACACGATTATGAAAGGTTTTTGCACACT 902
Query 874 GAGTAAAGGGAGCGAGGCGGTTGGTGTTTATAAGAAAATGAAGGAAGAAGGTGTTGAGCC 933
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 903 GAGTAAAGGGAGTGAGGCGGTTGGTGTGTATAAGAAAATGAAGGAAGAAGGTGTTGAGCC 962
Query 934 AGATCAGATTACTTACAATACTTTGATATTTGGATTGTCGAAATCTGGTAGAGTTGAGGA 993
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 963 AGATCAGATTACCTACAATACTTTGATATTTGGACTGTCGAAAGCTGGTAGAGTTGAGGA 1022
Query 994 AGCTAGGATGTACTTGAAAACTATGGTTGATGCGGGTTATGAGCCGGATACTGCCACTTA 1053
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1023 AGCTAGGATGTATTTGAAAACTATGGTTGATGCGGGGTATGAGCCGGATACTGCTACTTA 1082
Query 1054 CACGTCGCTGATGAATGGAATGTGTAGAAAAGGCGAGTCTTTAGGTGCGTTGAGTTTGTT 1113
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1083 CACATCACTGATGAATGGAATGTGTAGAAAAGGTGAGTCTTTAGGTGCGTTGAGTTTGTT 1142
Query 1114 AGAAGAAATGGAAGCAAGAGGGTGTGCTCCAAATGATTGCACTTATAATACTTTGCTTCA 1173
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1143 AGAAGAAATGGAAGCAAGAGGGTGTGCTCCAAATGATTGTACTTATAATACTTTGCTTCA 1202
Query 1174 TGGATTGTGCAAGGCAAGGTTGATGGATAAAGGGATGGAGTTATATGAATTGATGAAATC 1233
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1203 TGGATTGTGTAAAGCAAGGTTGATGGATAAAGGGATGGAGTTATATGAAATGATGAAATC 1262
Query 1234 AAGCGGTGTAAAGCTTGAGACCAATGGTTATGCCACTCTTGTGAGGTCTCTGGTTAAAAG 1293
||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1263 AAGTGGTGTAAAGCTTGAGAGTAATGGTTATGCTACACTTGTGAGGTCTCTGGTTAAAAG 1322
Query 1294 TGGCAAGGTCGCAGAGGCTTATGAAGTGTTTGATTATGCAGTTGATAGCAAGAGTTTGAC 1353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1323 TGGCAAGGTCGCAGAGGCTTATGAAGTGTTTGATTATGCAGTTGATAGCAAGAGTTTGTC 1382
Query 1354 AGATGCTTCTGCGTACTCTACACTTGAAACTACCTTGAAATGGTTGAAAAAAGCTAAAGA 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AGATGCTTCTGCGTACTCTACACTTGAAACTACCTTGAAATGGTTGAAAAAAGCTAAAGA 1442
Query 1414 ACAAGGCTTGGTTGTC-TAAGTGGTATCCTCTAGCTAAGCTTTTCCAACTTTCTTCTTTG 1472
||||||||||||| | ||| ||||||||||||||| |||||| || ||||||||||||
Sbjct 1443 ACAAGGCTTGGTTC-CATAAATGGTATCCTCTAGCTGAGCTTTACCGACTTTCTTCTTTA 1501
Query 1473 TACGAGTCCATATTTCATTTTT 1494
| | ||||||||||||||||||
Sbjct 1502 TGCAAGTCCATATTTCATTTTT 1523
Score = 71.3 bits (38), Expect = 3e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1 CAAAAACCTCTGCAAGAACCCTAAAGCTAAAACCTTTT 38
||||||||||||||||||||||||||||||||||||||
Sbjct 6 CAAAAACCTCTGCAAGAACCCTAAAGCTAAAACCTTTT 43
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5