BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480662
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17695.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1184 0.0
> AT2G17695.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function
DUF1990 (InterPro:IPR018960); Has 259 Blast hits to
259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa
- 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes
- 5 (source: NCBI BLink). | chr2:7684112-7685176 REVERSE
LENGTH=887
Length=887
Score = 1184 bits (641), Expect = 0.0
Identities = 718/755 (95%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 62 TTTTATGGGTCTGCTTCAATTGCTGTGGAAGAGATGGTGTTCTTGAGTTGGGGCCGTCCA 121
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 136 TTTT-TGGGTCTGCTTCAATTGCAGTGGAAGAGATGGTGTTCTTGAGTTGGGGCCGTCCA 194
Query 122 TCTTCCGAGCAACAGCAACAAGTAATTAACAAAACAGGAACCTTCAATTATGACAACAAG 181
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 195 TCTTCCGAGCAACAGCAACAAGTCATCAACAAAACAGGAACCTTCAATTATGACAACAAG 254
Query 182 TACAGAGGAGTTTCGTCTAGGTCTATAGCTAAACTTAAGGAAGATTCAGAGGTTGATAAA 241
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 255 TACAGAGGAGTTTCGTCTAGGTCTATTGCTAAACTTAAGGAAGATTCAGAGATTGATAAA 314
Query 242 GATGGATTCTTGATCAATCATGCTCGTGTTTTAGTTGGTTCGGGTAGAGAGAGTT-TCGA 300
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||
Sbjct 315 GATGGATTCTTGATCAATCATGCTCGTGTTTTAGTCGGTTCTGGTAGAGAGAGTTAT-GA 373
Query 301 GAAGGGCAAAAAAGCTCTACAGAATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GAAGGGCAAAAAAGCTCTCCAGAATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGA 433
Query 361 TCCTGCAACTCCTGTTGAAACCGGTAAGAAGTTTTGCATTTGTGTGAAAGAAGTTCTTCC 420
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 434 TCCTGCAACACCTGTTGAAACCGGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCC 493
Query 421 ATGGGTGATACTTCCTCTACAAGTGGTTTATGTTGACGAGAGCCGGAAATCAAGAAAAGG 480
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 494 ATGGGTGATGCTTCCTCTACAAGTGGTTTATGTTGACGAAAGCCGGAAATCAAGAAAAGG 553
Query 481 CCCTGCGCATTTCGGTTACGGAAGCGGTACTCTCCAGGGACATTTATTGGCTGGAGAAGA 540
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 554 CCCTGCGCATTTCGGTTACGGAAGCGGTACTCTTCAGGGACATTTACTCGCTGGAGAAGA 613
Query 541 ACGGTTTTCTATAGAGCTTGATGGAAATGGTGAGGTATGGTATGAGATAACATCTTTCTC 600
| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 614 AAAGTTTTCGATAGAGCTTGATGGAAATGGTGAGGTATGGTATGAGATAACGTCTTTCTC 673
Query 601 AAAGCCAGCTCATTTCTTGTCGTTCCTCGGATATCCTTATGTGAAGCTAAGGCAGAAGCA 660
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 674 AAAGCCTGCTCATTTCTTGTCGTTCCTCGGGTATCCTTATGTGAAGCTAAGGCAGAAGCA 733
Query 661 CTTTGCTCGTCTTTCTTCTGAAGCAGTGCTAAAACATCTCAAGGCTTCGTGATGATATCG 720
||||||||||| |||||||||||| ||||| |||||| |||| |||||||||||| ||||
Sbjct 734 CTTTGCTCGTCATTCTTCTGAAGCTGTGCTGAAACATGTCAATGCTTCGTGATGACATCG 793
Query 721 AAAATGAAGATATTTCGT-TAAACACTTTGTCTATACCAAAAATGAAGATGAAAGGTAAG 779
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 794 AAAATGAAGATATTT-GAATAAACACTTTGTCTATACCAAAAATGAAGATGAAAGGGAAG 852
Query 780 G-TTTTTATTCAGATGGTTGGTACTCTTAATACAT 813
| ||||||||||||||||| ||||||||||||||
Sbjct 853 GATTTTTATTCAGATGGTTAATACTCTTAATACAT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5