BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480665
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17705.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 872 0.0
> AT2G17705.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in
32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi -
0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink). | chr2:7692444-7693253 FORWARD LENGTH=810
Length=810
Score = 872 bits (472), Expect = 0.0
Identities = 699/800 (87%), Gaps = 50/800 (6%)
Strand=Plus/Plus
Query 1 AAGAAGAAAAAGCCGAGAGAGGAGGTG-AGAAGAATTCAGAATTGAGAA---ACAA-CAA 55
|||||||||||| | |||| || ||| ||||||| |||||||| |||| | || |||
Sbjct 3 AAGAAGAAAAAGAC--GAGA-GACGTGAAGAAGAAATCAGAATTCAGAATTGAGAAGCAA 59
Query 56 ACAATGGCTTTAACGATCTACACTTGCAAAGAATGCGGATCAGATCTAAATCTAAACCCT 115
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 60 ACAATGGCTTCAACGATCTACACTTGCAAAGAATGCGGATCAGATCTGAATCTAAACCCT 119
Query 116 AACGATTTATTTCCACCGGATTTCTACTTCGAAGCCGGTAACAAAGGAACGCTCTCATTC 175
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 AACGATTTATTTCCACCGGATTTCTACTTCGAAGCCGGTAACAAAGGAACACTCTCATTC 179
Query 176 GCCGCCGTCGATGCCGAGAAATTCCGATTTGAAAAAGAAGACAAGATCATGCCTTTCTTC 235
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 180 GCCGCCGTCGACGCCGAGAAATTCCGATTCGAGAAAGAAGATAAGATCATGCCTTTCTTC 239
Query 236 GAAACCCTAAATTACTGGGGAATCCAACGGAAACGAACCAAGATCAAGTGTAATAGTTGC 295
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 240 GAAACCCTAAATTACTGGGGAATCCAACGGAAACGAACCAAGATCAAGTGCACTAGCTGC 299
Query 296 AACCACCTCATCGGCTACATCTACGACGATGGTCCTCCGCTCACTGGTGGTATTGGTCAA 355
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 300 AACCACCTCATCGGTTACATCTACGACGATGGTCCTCCTCTCACTGGTGGTATTGGCCAA 359
Query 356 TACGGATTCGGTCCGAGTCAGGTCATTCCTCGTGCTGCTCGATATCGATTCAAAACCAAG 415
|||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 360 TACGGATTTGGTCCGAGTCAAGTCATTCCTCGTGCTCCTCGGTATCGATTCAAAACCAAG 419
Query 416 GCGGTTCAAGTCTCGTCCCAGACTTAGCTGAAGCA-----TTTA---C----A--TAGAT 461
||||||||||||||||||||||||||||| ||||| |||| | | |||||
Sbjct 420 GCGGTTCAAGTCTCGTCCCAGACTTAGCTAAAGCAGAGGGTTTAATGCTTTTACATAGAT 479
Query 462 ATGTATAAACTTGTCAAAAGGGTTCATAGGATTGTAGATGTTTGTTGCTTAAAAATCAGT 521
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 480 ATGTATAAACTTGTTAAAAGGGTTAATAGGATTGTAGATGTTTGTTGCTTAAAACTCAGA 539
Query 522 T-GCCA--TCGTT---CTTGGCGCTCG--CTT--CAC---CAAAAGCGCCAAGACCGATG 568
| | | ||||| |||| | ||| ||| | | | ||||||||||| ||||
Sbjct 540 TAGTAAGGTCGTTAGACTTGCCA-TCGGTCTTGGCGCTTGCTTCAGCGCCAAGACGGATG 598
Query 569 GCAACAAGGAGGTTTAACCGCCTTCTG-AGCTGATTTTTGTTACTTGCTTTTGAAGAAAC 627
|||| | ||||||||||||||||| || | |||||||||||| |||||||||||||||||
Sbjct 599 GCAATACGGAGGTTTAACCGCCTTTTGGAACTGATTTTTGTTGCTTGCTTTTGAAGAAAC 658
Query 628 ATCTACTATCCTATTCTCTGTTTTATCTCTTGTCTATTGTAGCTAGTTTAGTTAAGATAT 687
|||||| ||| |||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 659 ATCTACAATCATATTCTCTCCTTTGTCTCTTGTCTATTGTAGCTAGTATAGTTAAGATAT 718
Query 688 GT--G----GT-TG--G----CTTGGATTTTGATCATATGTGTAATGTTTGTGTTCGTTG 734
|| | || || | |||||||||||||||||| |||| |||||||||| ||||
Sbjct 719 GTATGTTAAGTATGTTGTTGGCTTGGATTTTGATCATATTTGTAGTGTTTGTGTTTGTTG 778
Query 735 TGAATTTGAATCACATGGTT 754
||| ||||||||||||||||
Sbjct 779 TGAGTTTGAATCACATGGTT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5