BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480666
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17710.1 | Symbols: | unknown protein; Has 39 Blast hits to... 1160 0.0
> AT2G17710.1 | Symbols: | unknown protein; Has 39 Blast hits
to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:7693596-7694746 FORWARD
LENGTH=911
Length=911
Score = 1160 bits (628), Expect = 0.0
Identities = 793/864 (92%), Gaps = 45/864 (5%)
Strand=Plus/Plus
Query 14 TATAGTTTGTCTTAACGTACAAGATAATTTGAAGGGTAGACGTAGACGTTGGATACTTCT 73
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 47 TATAGTTTGTCTTAACGTACAAGATAATTTGAAAGGTAGACGTAGACGTTGGATACTTAT 106
Query 74 TTGGTAGACTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTAAGATTCAGAATC 133
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 107 TTGGTAGGCTCTTAAGAATCTTAGGTGTATCTCTTTAGTTTGAAGGTTAGATTCAGAATC 166
Query 134 TCTGTAGATTC------A---TTTT-GGTGTGATCGTTGTGTTG--------T--AT--- 170
||||||||||| | |||| |||||||| |||||||| | ||
Sbjct 167 TCTGTAGATTCATTAGTAGCTTTTTCTGTGTGATCTTTGTGTTGTATATATATAGATCGA 226
Query 171 A-T-A-TTTAGC---T----GGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 220
| | | |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 227 ATTGATTTTAGCTGGTGAAAGGTGAAGTTGTGGTATGAATATGAAGAAACAGATTATGGA 286
Query 221 TGAGTCTG-AGAAGTCATTGATGCCGCCTCCTCCTCCACCG---CTTCCTCCATCTCCA- 275
|||||||| | ||||||||||||| |||||||||||||||| |||||||||||| ||
Sbjct 287 TGAGTCTGTA-AAGTCATTGATGCTGCCTCCTCCTCCACCGCTTCTTCCTCCATCT-CAG 344
Query 276 GGATATGGATTTAGAAAGATCCATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTT 335
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 345 GGATATGGATCAAGAAAGATCGATGGAGACAGCATAACCAATAAACAGATCAAGAAGTTC 404
Query 336 TGGAGGCAGAAGCAGATCATTGAAGAGGATCATCTCTTTTCTGCTATTAAGGCTGCAGCT 395
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 405 TGGAGACAGAAGCAGATCATTGAAGAGGATCATCTCTATTCTGCTATTAAGGCTGCAGCT 464
Query 396 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CGTGTCAGAGCTCGTAATCTCTCTGATGAGGACTACAAACGCTTTGAAGAAAGCTTGGAC 524
Query 456 ATGGAGGTCCTG-ATAACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 514
||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATGGAGGACCTGGA-AACCGAAGATCATCAGGGATTGAAAGACTGGTGGACAAAGAGCAA 583
Query 515 ATACGCATACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 574
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 ATACGCGTACTTGAACCAGCCGGCTCTTGGATCTGCAGATTCACTGAAGAGAAAGAGGTT 643
Query 575 TTCGACATATACACCAAACTGGTTCTCGTTCAAGCCATGCAATCCTCTCTACGCAACTTC 634
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 644 TTCGACTTATACACCAAACTGTTTCTCGTTCAAGCCTTGCAATCCTCTCTACGCAACTTC 703
Query 635 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATTGTCTTGCATATAT 694
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 704 GCTCAATGTCTTTTGAACCATGAGCAGCAAACTCTGCAAGATCAATCGTCTTGCATATAT 763
Query 695 GTATATAGATGTTCGTGTGTGTGTCTCTGAACAT-TCATGTGTTAATGCTTCTATGTTAA 753
||||||| ||||||||||||| ||||| |||| |||||||||| ||||||||| ||||
Sbjct 764 GTATATATTTGTTCGTGTGTGT--CTCTGTACATGTCATGTGTTATTGCTTCTATATTAA 821
Query 754 TGGATCTGGACTTTGGTGTGGTTTTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 813
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 822 TGGATCTGGACTTTGGTGTGGTTGTTGATTTGTAACTGTTGAATAAAATCTTTCTATGGA 881
Query 814 ACATTAATTTCTTCTTGTTCCATA 837
||| ||||||||||||||||||||
Sbjct 882 ACACTAATTTCTTCTTGTTCCATA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5