BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480667
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17720.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1838 0.0
> AT2G17720.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:7697336-7699568
FORWARD LENGTH=1339
Length=1339
Score = 1838 bits (995), Expect = 0.0
Identities = 1227/1332 (92%), Gaps = 43/1332 (3%)
Strand=Plus/Plus
Query 1 AGAAGACAAAGAAGAAGAGAATCAATCACACAAGAAAAATTATAATCCTTCTTAAT--TC 58
|||||||||||||||||||| || |||||||||||||||||| ||| ||||||||| ||
Sbjct 1 AGAAGACAAAGAAGAAGAGATTCGATCACACAAGAAAAATTACAATTCTTCTTAATCCTC 60
Query 59 -TTA-T-TATATATAAATAAACTTCAATCTAAGCTTCGTCGTAATTTCTCTTCCGTTCAA 115
||| | |||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 61 ATTATTATATATATAAATAAACTTCAATCTAAGCTTCTTCGTAATTTCTCTTTCGTTCAA 120
Query 116 TGTTGTTCTTTTAGATCTCGAACAAAACAAAATCTCCAGaaaaaaaaaaaaTCAATTTCC 175
|||| |||||||||||||||||||||||||||||||||| || |||||| ||| ||||
Sbjct 121 TGTTATTCTTTTAGATCTCGAACAAAACAAAATCTCCAG---AAGAAAAAACCAAATTCC 177
Query 176 ATGGCGTCTAAATCGAAGCAACATCTTCGTTATCAGCCACGGAAATCTGTGTCACGATCA 235
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 178 ATGGCGTCTAAATCGAAGCAGCATCTTCGTTATCAGCCGCGAAAATCTGTGTCACGATCA 237
Query 236 ACACAAGCTTTCACAGTGCTTATTCTTCTACTTGTAGTGATTCTGATTCTTCTGGGTCTC 295
|||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 238 ACACAAGCTTTCACGGTGCTTATACTTCTTCTCGTAGTGATTCTGATTCTTCTGGGTCTC 297
Query 296 GGGATTTTGTCACTACCTAATGCTAATAGAAACTCTTCGAAGACGAATGATTTGACCAAC 355
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 GGGATTTTGTCACTACCTAATGCTAATAGAAACTCTTCCAAGACGAATGATTTGACCAAC 357
Query 356 ATTGTACGGAAGAGTGAGACGAGTGATGGAGATGAAGATGGGAATGGTGAGCGTTGGGTT 415
|||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 358 ATTGTACGAAAGAGTGAGACGAGTTCTGGAGATGAAGAAGGGAATGGTGAACGTTGGGTT 417
Query 416 GAAGTGATTTCTTGGGAGCCTCGAGCTGTTGTTTATCACAATTTCTTGACCAATGAAGAA 475
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 418 GAAGTTATTTCTTGGGAGCCTCGTGCTGTTGTTTATCACAATTTCTTGACTAATGAAGAA 477
Query 476 TGTGAGCACTTGATCAATCTTGCTAAACCGAACATGGTTAAGTCAACCGTGGTTGATGAG 535
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 478 TGTGAGCACTTGATCAGCCTTGCTAAACCGAGTATGGTTAAGTCAACCGTGGTAGATGAG 537
Query 536 AAAACCGGTGGTAGCAAAGATAGCAGAGTAAGAACTAGCTCAGGAACTTTCCTTAGAAGA 595
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 538 AAAACCGGTGGGAGCAAAGATAGCAGAGTGAGAACTAGCTCAGGAACTTTTCTTAGAAGA 597
Query 596 GGACATGACGAAGTTGTTGAGGTGATTGAGAAAAGGATTTCAGATTTCACATTCATTCCT 655
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 GGACATGACGAAGTTGTCGAGGTGATTGAGAAAAGGATTTCAGATTTCACCTTCATTCCT 657
Query 656 GTTGAAAATGGAGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAGAAGTACGAGCCT 715
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 GTTGAAAATGGTGAAGGTCTTCAAGTTCTTCACTACCAAGTTGGGCAGAAGTATGAGCCT 717
Query 716 CACTATGACTATTTCTTAGATGAGTTCAACACCAAGAACGGAGGACAACGAATAGCTACT 775
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 CACTATGACTATTTCTTAGATGAGTTCAACACCAAGAATGGAGGACAACGAATAGCTACT 777
Query 776 GTGCTTATGTACCTCTCGGATGTCGATGATGGTGGCGAGACTGTGTTCCCTGCAGCAAGA 835
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGCTTATGTACCTCTCTGATGTCGATGATGGTGGCGAGACTGTGTTCCCTGCAGCAAGA 837
Query 836 GGAAACATTAGTGCAGTCCCATGGTGGAACGAGCTCTCAAAATGTGGTAAAGAAGGACTA 895
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGAAACATTAGTGCTGTCCCATGGTGGAACGAGCTCTCAAAATGTGGTAAAGAAGGACTA 897
Query 896 TCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGGCCTGATGCCTCT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 TCTGTTCTACCAAAGAAGCGAGATGCTTTACTTTTCTGGAACATGAGGCCTGATGCATCT 957
Query 956 CTAGACCCTTCGAGTTTGCACGGTGGATGTCCAGTGGTGAAAGGAAACAAATGGTCATCC 1015
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTAGACCCTTCGAGCTTGCACGGTGGATGTCCAGTGGTGAAAGGAAACAAATGGTCATCC 1017
Query 1016 ACGAAATGGTTCCATGTCCACGAGTTCAAGGTTTAAGAACCAAACACAGaaaaaaaaaa- 1074
|||||||||||||||||||||||||||||||||||||| |||| || || ||| |||
Sbjct 1018 ACGAAATGGTTCCATGTCCACGAGTTCAAGGTTTAAGAG--AAAC-CA-AACAAAGAAAG 1073
Query 1075 CTAAAATTTGAGG-G-TTTT-CACGGAAGCTTCAAATTTGTGTGGATACAAATAAACAGA 1131
||||||| ||||| | |||| || ||||||||| ||| |||||||||||| |||||||
Sbjct 1074 CTAAAATATGAGGAGGTTTTTCATGGAAGCTTCGAATGTGTGTGGATACAGTTAAACAGG 1133
Query 1132 TGTACGATGTGT-TT-CCCTTTTGAAGTGAGAGATCCTTAGGAAATTGGAGGCTGTT-TT 1188
| || |||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1134 TATA--ATGTGTATTTCCCTTTTGAAGTGAGAGATCCTTAGGAAATTGGAGGCTGTTCTT 1191
Query 1189 TCCTTAGGGATATTTGAACTTTTT---CTTTT------AAACTATTT-G--T-A------ 1229
|| | |||||||||||||||||| ||||| ||| ||||| | | |
Sbjct 1192 TCATGGGGGATATTTGAACTTTTTGTACTTTTTCTTCTAAATTATTTTGAATGATTTGTA 1251
Query 1230 CTTTACGACATGTTCGGATCTGAGTTTTTGTAACTTT-AACAACTCAATAC-AACCATGC 1287
||||||||||| |||| |||||||| || |||||||| ||||||||||||| |||||||
Sbjct 1252 CTTTACGACATATTCGAATCTGAGTCTT-GTAACTTTTAACAACTCAATACGAACCATGA 1310
Query 1288 ATTTTCCGTTTA 1299
||||||||||||
Sbjct 1311 ATTTTCCGTTTA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5