BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480670
Length=1886
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17760.1 | Symbols: | Eukaryotic aspartyl protease family p... 3155 0.0
> AT2G17760.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr2:7713314-7716464 FORWARD LENGTH=1911
Length=1911
Score = 3155 bits (1708), Expect = 0.0
Identities = 1829/1888 (97%), Gaps = 6/1888 (0%)
Strand=Plus/Plus
Query 1 CTTTTGCCTAATTTCTCGGTTTCATTTACAAAATTCTCATTTTGATTCTTTCTTACTCTT 60
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 CTTTTGCCTAATTTCTCGGTTTCATTTCCAAAATTCTC-TTTTGATTCTTTCTTACTCTT 59
Query 61 TAGCTAGAGAAGATTTATACTGGGTTTTGAGTATTTCTCGGAAAGTTTCGtttttttttt 120
| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 60 TCGCTAGAGAAGATTTAGACTGGGTTTTGAGTATTTCTCGGAAATTTTCGTGTTTTTTTT 119
Query 121 ttCTGGGAAAGTTTCCGAGATCTCGGCGGAGTACtttttttGACGACGAACCAGTATGGT 180
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 120 TTCTGGGAAAGTTTCCGAGATCTCGGTGGAGTACTTTTTTTGGCGACGAACCAGTATGGT 179
Query 181 TTGGTACTCAAGCTGGAGAATTTTGTTTCTGGGTCTGCTTATTTTGCTAGCTTCGAGCTG 240
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 180 TTGGTACTCAAGCTGTAGAATTTTGTTTCTGGGTCTGCTTATTTTGTTGGCTTCGAGCTG 239
Query 241 GGTTTTGGAAAGATGCGAAGGATTTGGTGAATTTGGGTTTGAATTTCATCATCGTTTCTC 300
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTTTGGATAGATGCGAGGGATTTGGTGAATTTGGGTTTGAATTTCATCATCGTTTCTC 299
Query 301 CGATCAGGTTGTTGGGGTTTTACCTGGAGATGGTTTACCTAATCGAGATTCTTCTAAGTA 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGATCAGGTTGTTGGGGTTTTGCCTGGAGATGGTTTACCTAATCGAGATTCTTCTAAGTA 359
Query 361 TTATAGAGTGATGGCTCATCGTGATCGGTTAATCAGAGGTCGTCGACTTGCAAACGAAGA 420
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 360 TTATAGAGTGATGGCTCATCGTGATCGGTTAATTAGAGGTCGTCGACTTGCAAATGAAGA 419
Query 421 TCAATCACTTGTTACTTTCTCTGACGGCAACGAAACTATTCGTGTTGATGCCCTAGGATT 480
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TCAATCACTCGTTACTTTCTCTGACGGCAACGAAACTGTTCGTGTTGATGCCCTAGGATT 479
Query 481 TTTGCATTATGCTAATGTGACGGTTGGGACGCCGTCTGATTGGTTTCTGGTTGCTTTAGA 540
||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 480 TTTGCATTACGCTAATGTGACTGTTGGGACGCCGTCTGATTGGTTTATGGTTGCTTTAGA 539
Query 541 TACTGGAAGTGACTTGTTTTGGTTGCCCTGTGACTGCACCAATTGTGTTCGTGAATTGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TACTGGAAGTGACTTGTTTTGGTTGCCCTGTGACTGCACCAATTGTGTTCGTGAATTGAA 599
Query 601 AGCACCTGGTGGCTCGAGTTTGGACCTCAATATTTATAGCCCTAATGCATCATCGACAAG 660
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 600 AGCACCTGGTGGCTCGAGTTTGGACCTTAATATTTATAGCCCTAATGCTTCATCGACAAG 659
Query 661 TACTAAAGTTCCTTGTAATAGCACATTATGTACAAGAGGTGATCAATGCGCTTCCCCTGA 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 TACTAAAGTTCCTTGTAATAGCACATTATGTACAAGAGGTGATCGATGCGCTTCCCCTGA 719
Query 721 AAGTAATTGCCCATACCAGATCCGGTATCTTTCTAATGGTACCTCGTCTACCGGAGTCTT 780
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 720 AAGTGATTGCCCATACCAGATCCGGTATCTTTCTAATGGTACCTCTTCTACTGGAGTCTT 779
Query 781 GGTGGAGGATGTACTTCACTTAGTTTCAAATGACAAAAGTTCCAAAGCTATTCCAGCTCG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 GGTGGAGGATGTACTTCACTTAGTTTCAAATGACAAAAGTTCCAAAGCTATTCCCGCTCG 839
Query 841 AGTTACTTTGGGATGTGGTCAAGTTCAGACTGGTGTATTCCATGATGGTGCAGCTCCAAA 900
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TGTTACTTTTGGATGTGGTCAAGTTCAGACCGGTGTATTCCATGATGGTGCAGCTCCAAA 899
Query 901 TGGTCTTTTCGGGCTTGGCTTAGAAGACATATCGGTTCCTAGCGTACTAGCAAAAGAAGG 960
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 900 TGGTCTTTTCGGGCTTGGCTTAGAAGACATATCGGTGCCTAGTGTACTAGCAAAAGAAGG 959
Query 961 AATTGCAGCTAACTCATTCTCAATGTGTTTTGGGAACGATGGAGCTGGTAGGATCAGTTT 1020
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATTGCAGCAAACTCATTCTCAATGTGTTTTGGGAACGATGGAGCTGGTAGGATCAGTTT 1019
Query 1021 TGGGGATAAAGGTAGCGTAGACCAGCGGGAAACACCATTGAACATAAGACAACCACATCC 1080
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGAGATAAAGGTAGCGTAGACCAACGGGAAACACCATTGAACATAAGACAACCACATCC 1079
Query 1081 TACTTACAATATCACCATCACTAAAATAAGCGTTGGAGGAAATACCGGCGATCTTGAATT 1140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TACTTACAATATCACCGTCACTAAAATAAGCGTTGGAGGAAATACCGGCGATCTTGAATT 1139
Query 1141 TGATGCTGTTTTCGACTCTGGAACCTCGTTCACTTATCTGACTGATGCGGCTTACACCCT 1200
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1140 TGATGCTGTTTTTGACTCTGGAACCTCGTTCACTTATCTGACTGATGCAGCTTACACCCT 1199
Query 1201 TATTTCAGAAAGCTTTAATTCTCTAGCTCTGGACAAACGTTATCAAACAACTGATTCCGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1200 TATTTCAGAAAGCTTTAATTCTCTAGCTCTGGACAAACGTTATCAAACAACTGATTCTGA 1259
Query 1261 GTTACCTTTTGAGTACTGTTATGCATTAAGCCCAAACAAAGACAGCTTCCAGTATCCAGC 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTTGCCTTTTGAGTACTGTTATGCATTAAGCCCAAACAAAGACAGCTTCCAGTATCCAGC 1319
Query 1321 TGTGAATCTGACAATGAAAGGCGGGAGCTCATATCCCGTTTATCACCCGTTAGTAGTAAT 1380
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 TGTGAATCTGACAATGAAAGGCGGGAGCTCGTATCCCGTTTATCACCCGTTAGTAGTAAT 1379
Query 1381 CCCCATGAAGGACACAGATGTCTACTGTTTAGCCATCT-TGAAGATAGAAGACATTAGCA 1439
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1380 CCCCATGAAGGACACAGATGTCTACTGTTTAGCCAT-TATGAAGATAGAAGACATTAGCA 1438
Query 1440 TCATTGGACAGAATTTCATGACTGGCTATCGCGTTGTCTTTGATCGTGAGAAACTGATTC 1499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TCATTGGACAGAACTTCATGACTGGCTATCGCGTTGTCTTTGATCGTGAGAAACTGATTC 1498
Query 1500 TGGGGTGGAAAGAATCTGATTGTTACACCGGTGAGACCTCGGCTCGGACGCTTCCATCGA 1559
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 TGGGGTGGAAAGAATCTGATTGTTACACCGGTGAGACATCGGCTCGGACGCTTCCATCGA 1558
Query 1560 ACCGTTCCTCCTCCTCGGCTAGACCGCCAGCTTCTTCGTTTGACCCAGAGGCGACAAACA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACCGTTCCTCCTCCTCGGCTAGACCGCCAGCTTCTTCGTTTGACCCAGAGGCGACAAACA 1618
Query 1620 TACCATCTCAAAGACCAAACACGTCGACTTCTTCTGCTGCTTATTCTCTCTCTATCTCAC 1679
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1619 TACCATCTCAAAGACCAAACACGTCGACGACTTCTGCTGCTTATTCTCTCTCTATCTCAC 1678
Query 1680 TTTCATTGTTCTTCTTCTCAATTTTGGCCATCCTTTAATTATTACACGTATATATTTAGC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TTTCATTGTTCTTCTTCTCAATTTTGGCCATCCTTTAATTATTACACGTATATATTTAGC 1738
Query 1740 CATGAATTTGTATTCTTTAGAAGATTATTGGGTTCAATCACCAAAAA-ATATTGCACACT 1798
||| ||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||
Sbjct 1739 CATCAATTTGTATTCTTTAGAAGATAATTGGGTTAAATCACCAAAAACATATT--ACACT 1796
Query 1799 ACAGTTGTAttttttttttCTATGTTGTATATGATATTTAATTTTTAACAATTATATATT 1858
||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 1797 ACAGTTGTATTACTTTTTTCTATGTTGTATATGATAATTATTTTTTAACAATTATATACT 1856
Query 1859 AGTTATTTGGTGAAGTTTTGTTGTAGAT 1886
||||||||||||||||||||||||||||
Sbjct 1857 AGTTATTTGGTGAAGTTTTGTTGTAGAT 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93373013700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5