BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480676
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17787.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1496 0.0
> AT2G17787.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G35940.2);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:7731075-7733019 FORWARD LENGTH=1440
Length=1440
Score = 1496 bits (810), Expect = 0.0
Identities = 1150/1304 (88%), Gaps = 64/1304 (5%)
Strand=Plus/Plus
Query 1 TTTTTCTATAAATAACGAAGCAACGAGGTAAACGAGAAAAATTCTGGATCGGAGAGAGCT 60
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 30 TTTTTCTATAAATAACGAAGCAACGA-GTTAACGAGAAAAATTCTGGATCGGAGAGAGCT 88
Query 61 TCGAAGCCTGGGAATTTTCGTTACCCCCTCCCTTCGTTCTTCTCTGATCTCGAATTCGAT 120
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct 89 ACGAAGCCTGGGAATTTTCGTTA---CCT-CCTTCGTTCTTCTCTGATCTCGAATTCAAT 144
Query 121 ACCAAATTCTTGC-ATCTCCCGATTTTGATTTTATCATCACTACTATGTCGGGATAACAA 179
||||||||||| | ||||||||| | ||||||| | || | ||||| | |||||||||
Sbjct 145 ACCAAATTCTT-CAATCTCCCGAATCTGATTTTCTTAT--C-ACTATCCCTGGATAACAA 200
Query 180 AAGCCCCCAAAGT-AAAACCCAATT--G-------CG-AAACCAATCTAGGG-TTTCGCG 227
||||||||||||| ||||||||||| | || |||||||||||||| |||||||
Sbjct 201 AAGCCCCCAAAGTAAAAACCCAATTGCGATTCCCTCGTAAACCAATCTAGGGTTTTCGCG 260
Query 228 AGTTCGTCTCTGA----GTTTGTTTGTGATCGTGTGAGTATGTCTCGGTGTTATCCGTTT 283
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 AGTTCGTCTCTGAGCTTGTTTGTTTGTGATCGTGTGAGAATGTCTCGGTGTTATCCGTTT 320
Query 284 CCACCACCTGGTTATGTTCGGAAAGAAACTCTGATCGAATCGATCAAGGGGGCaaaggag 343
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 321 CCACCACCTGGTTATGTTTGGAAAGAAAGTCTGATCGAATCGATCAAGGGGGCAAAGGAG 380
Query 344 gaagttaagaaagatagaaaacacaagaggaaggaaaaagagagaaaggagagggaaaaT 403
||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 381 GAAGTGAAGAAAGATAGAAAACACAAGAGGAATGAAAAAGATAGAAAGGATAGGGATAAT 440
Query 404 GAGGCGGGTCGAAGCAGGAAGCATCGGCATAAGAGACGGCGCAAAGATGAAGGCACCAAT 463
|||||||| | ||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 441 GAGGCGGGGAGGAGCAGGAAGCATCGGCATAAGAGACGGCGGAAAGATGAAGGCGCC-AT 499
Query 464 GCTAGTCGTAGTGGCAAATTAATAAACAGCGAGGTCGAGTTTTTAGAGAAGAGCTGCCAG 523
| | | ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||
Sbjct 500 --T-G-C-TAGTGGCAAATTAGTAAGCAGTGAGGTCGAGTTGTTAGAGAAGAGCTGCCAG 554
Query 524 ACAGTGGAGCTTGAGCTTCAAACATCGTCTCAGACTTCTTGTGATAGCACTCTTCATAGC 583
|| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 555 ACTGTGGAACTTGAGCTTCAAACATCGTCTCAGAATTCTTGTGATAGCACTCTTCATAGC 614
Query 584 AATGAGAGACCAAAGCAAATTCAGAGTCAGCCCCTTGATGAAACCGGCATACGGA-TCCG 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 615 AATGAGAGACCAAAGCAAATTCAGAGTCAGCCCCTTGATGAAACCAGCATACGGACTCGG 674
Query 643 CTTACCTGACAAAGGGCAGGAAGATCCTGAGGATGAGGTGATGATGACCAGCAAGGATCA 702
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 675 -TTACCTGACAAAGGGCAGGAAGATCCTGAGGATGGGGTGATGATGACCAGCAAGGATCA 733
Query 703 AAGA------T---CCCGGGAAAAGTTAGATGCTTCTCTGGCTGCTGC--C-CCTAAAGA 750
|| | | ||||||||| |||||||||||||| |||||| | | ||||| ||
Sbjct 734 AAAACAGCGCTTTTCCCGGGAAATGTTAGATGCTTCTCAAGCTGCTACTGCTCCTAATGA 793
Query 751 GTCTGTTGGTCATCTTTATTCGACTC-CACGAGATGCTTTTAGGGTCTGTCAAGAGAAAG 809
||||||||||||| | | | || || |||| ||| || ||| |
Sbjct 794 GTCTGTTGGTCAT-TCAAGG-GTCTGTCAAGAGAAAAGAATAGA-TC---CAACTTTTGG 847
Query 810 TAAGAGATCCAGCCAGAGAAAAAATAACAAAACTCGGCAAAGAGAAGAAACCAATTCATC 869
| | || || ||||| | | | |||||||| |||||||||||| || ||| |
Sbjct 848 TTCG---TCGAG--AGAGATCACA-A-CAAAACTCAACAAAGAGAAGAAGTCAGTTCCTT 900
Query 870 CGAAAGATAACAGAAAAATCAGTAAAGAGAAGAAGATTCCATCATCATCTTCATGTA-CT 928
||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| |
Sbjct 901 CGAAAGATAACAGAAAAGTTAGTAAAGAGAAGAAGATGCCATCATTATCTTCATGTAAC- 959
Query 929 CCTCTGGAACAAGAGAAACC-ATCCTCTAGTCATCAAGAAACCATTGGATCTTCAAAGCT 987
|||||||||||||||||||| | |||||||||||||||||||| |||| |||| |||||
Sbjct 960 CCTCTGGAACAAGAGAAACCGA-CCTCTAGTCATCAAGAAACCCCTGGACCTTCCAAGCT 1018
Query 988 ATTATGCAGGAAATGCCCTCCTTCCATGGCCGGGCAACTCTTGAATCTTATCGAGAACTG 1047
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1019 ATTATGCAGGAAATGCCCTCCTTCCATGGCTGGGCAACTCTTGAATCTTATCGAGAACTG 1078
Query 1048 GGCTCCTGATCGGGTTGAGAGCAAGCTCACAGACTCTGAAGATCAAGAATGGTGGTTGTT 1107
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1079 GGCTCCTGATCGGGTTGAGAGCAAGCTCACTGACTCTGAAGATCAAGAATGGTGGTTGTT 1138
Query 1108 CATCAAGTTTGGAGCCAAAAGGCAACAAGTTAGCAATCAGAGAACCAACCAGGGAAGTAG 1167
||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1139 CATCAAGTTTGGAGCCAAAAGTCCACAAGTTAGCAATCAGAAAACCAACCAGGGAAGTAG 1198
Query 1168 TTTGATGGTGTGGCCAACTGCTAGATTTCTTCCGGAAGCTGAAGTACACGCATTGCCATT 1227
|| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1199 TTCCATGGTGTGGCCGACTGCTAGATTTCTTCCTGAAGCCGAAGTACACGCATTGCCATT 1258
Query 1228 CACTGTCCCGTTCTGATTTCAACAAAGTTGGTCGAGAGAGAGTG 1271
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CACTGTCCCGTTCTGATTTCAACAAAGTTGGTCGAGAGAGAGTG 1302
Score = 108 bits (58), Expect = 2e-22
Identities = 104/123 (85%), Gaps = 15/123 (12%)
Strand=Plus/Plus
Query 1261 GAGAGAGAGTGGTTAACATGACCAACATATAGTTTTCCTATGTATTTTAGA--A------ 1312
|||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 1312 GAGAGAGAGTGGTTAACATGACCAACATATAGTTTTCCCAAGTATTTTAGAGTAGCCTTG 1371
Query 1313 AA-CTCA-GAA--T-ATAA--ATGTGTGATTCTTTGTAGATGTACTGGTAATATAGTAAA 1365
|| || | ||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AAACTTAAGAAACTCAGAATTATGTGTGATTCTTTGTAGATGTACTGGTAATATAGTAAA 1431
Query 1366 TCA 1368
|||
Sbjct 1432 TCA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5