BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480683
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17840.1 | Symbols: ERD7 | Senescence/dehydration-associated... 2459 0.0
> AT2G17840.1 | Symbols: ERD7 | Senescence/dehydration-associated
protein-related | chr2:7755605-7757852 REVERSE LENGTH=1731
Length=1731
Score = 2459 bits (1331), Expect = 0.0
Identities = 1514/1602 (95%), Gaps = 13/1602 (1%)
Strand=Plus/Plus
Query 1 CCGATTTGAAATCTCCGACGACAATGGAACCCTCCGGCGACAAGCAAGCTTCATCTCTCT 60
||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||| ||||| |
Sbjct 32 CCGATTTGAAATCGCCGGCGAAAATGGAATCCTCCGGCGACAAGCAAACTTCTTCTCTTT 91
Query 61 ACCCTACTGTTGACACATCGAATCCCGAAGCTCCTATAAACCCTACCTCTTCATCATCTA 120
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 92 ACCCTACTGTTGACACATCCAATCCCGAAGCTCCTATAAACCCTAGCTCATCATCTTCTA 151
Query 121 CTAATAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAGC 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 152 CTAACAATCTCTATCCTTCTCTCGATATGAATGATCTCGCTCGTAATCTCTTCCCTGAAC 211
Query 181 AACCGGAGACGAGTTCCGA-TCCCGTTTTGGCTCCTCCTGCAGCGACGGAGGAAGTAATT 239
|||| |||||||||| | | ||| |||| |||||||| || ||||||||||||||||||
Sbjct 212 AACCAGAGACGAGTT-CTATTCCGGTTTCAGCTCCTCCCGCTGCGACGGAGGAAGTAATT 270
Query 240 TTGAAAATCTCCGGCGCGATTCTTCACTTAATCGACACATCTTACAGCGTCGAGCTCGCT 299
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 271 TTGAAAATCTCCGGCGCGATTCTTCATTTAATCGACAAATCTTACAGCGTCGAGCTCGCT 330
Query 300 TGCGGCGATCTTTCGATCATCCGTATTGTTCAAGGAGATAATGTTGTCGCTGTTCTTGCT 359
||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 331 TGCGGTGATCTTGAGATCATCCGTATTGTTCAAGGAGAGAATGTTGTCGCTGTTCTCGCT 390
Query 360 CGTGT-TGGAGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCCGTCAAGGTCGA 418
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 AGTGTCT-CCGATGAGATTCAATGGCCGTTGACTAAGGATGAGAACTCTGTCAAGGTCGA 449
Query 419 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAAATCACACATGATTCAAGCGA 478
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 450 TGAGTCTCATTACTTCTTCACGCTTCGTCCTACCAAAGAGATCTCACATGATTCAAGCGA 509
Query 479 CG-AG--GA---AGATGGAGCGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 532
|| || || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 510 CGAAGAAGACGGAGATGGAGGGAAAAACACTAACGAGATGTTGAACTACGGACTTACAAT 569
Query 533 TGCTTCCAAAGGTCAAGAGCATTTGCTGGTGGAGCTTGAGAAGATCTTGGAGGATTACAG 592
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 570 TGCTTCTAAAGGTCAAGAGCATTTACTGGTGGAGCTTGAGAAGATCTTGGAGGATTATAG 629
Query 593 TTGTTTCACGGTGCAGGAAGTGTCGGAGGAAGCGAAGGAAGCAGGGGAAAAGGTTTTGGA 652
| ||||| | |||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 630 TAGTTTCTCTGTGCAGGAGGTGTCAGAGGAAGCGAAGGAAGCAGGTGAAAAGGTTTTGGA 689
Query 653 TGTGACGGTGGCGAGAGAGACATCGCCGGTGGAGCTTACTGGAGAGAGGAAAGAGATTGT 712
||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||
Sbjct 690 TGTGACGGTGGCGAGAGAGACGTCTCCGGTGGAGCTTACTGGGGAAAGGAAAGAGATTGT 749
Query 713 GGAGAGGCAATGTTCGGCTTATTGGACGACTTTAGCTCCGAATGTGGAGGATTATAGCGG 772
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 750 GGAGAGGCAATGTTCTGCTTATTGGACTACTTTGGCTCCGAATGTGGAGGATTATAGCGG 809
Query 773 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GAAGGCGGCGAAGCTGATTGCAACTGGCTCAGGACATTTGATAAAAGGGATTCTTTGGTG 869
Query 833 TGGAGATGTGACTATGGATAGGCTAATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 892
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 870 TGGAGATGTGACTATGGATAGGCTTATTTGGGGAAATGGTTTCATGAAAAGGAGGTTGTC 929
Query 893 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGGATCAGGAGAGTGAA 952
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 930 AAAGGCTGAGAAGGAGAGTGAAGTTCACCCTGACACCTTGAAAAGAATCAGAAGAGTGAA 989
Query 953 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GAGGATGACCAAAATGACAGAGAGTGTAGCAAACAGCATACTGTCTGGAGTCCTTAAAGT 1049
Query 1013 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTTAGTCT 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1050 TTCTGGATTCTTCACAAGTTCAGTGGCAAACACCAAAGTAGGAAAGAAATTCTTCAGCCT 1109
Query 1073 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGATGCTGT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1110 TCTTCCTGGAGAAGTCATCCTTGCATCTCTTGACGGATTCAATAAGGTCTGTGACGCTGT 1169
Query 1133 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTCACAACTGAACTTGTTGA 1192
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1170 TGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGA 1229
Query 1193 TCACAAGTATGGTGGTAAAGCGGCTGAGGCAACAAACGAAGGGCTCGATGCAGCAGGATA 1252
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1230 TCACAAGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATA 1289
Query 1253 TGCGATTGGCACAGCCTGGGTTGCTTTCAAAATCAGAAAGGCTATTAACCCGAAGAGTGT 1312
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1290 TGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATTAACCCGAAGAGTGT 1349
Query 1313 ACTCAAGCCTTCGACGCTTGCAAAGACCGCCATTAGATCTGCAGCTTCACAAAAGAAAGC 1372
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1350 ACTCAAGCCTTCGACGCTTGCAAAAACCGCCATTAGATCTGCAGCTTCACAAAAAAAAGC 1409
Query 1373 GTAGGAAGGCTTTCCTGATGAAGCAAAACAGACTCATTTGTCCTGTTTGTTTGTATCGTC 1432
||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1410 CTAGTAAGGCTG-CCTGATGAAGCAAAACAGACTCATTGGTCCTGTTTGTTTGTATCGTC 1468
Query 1433 TTGTTGTCTTTTGATACAGAAGTAAAACTGAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1492
|||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1469 TTGTTGTCTTTTGATAAATAAGTTAAACTAAAAAGAGGTGTGGATTAGTAGTTGTTGTGA 1528
Query 1493 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGAGTTGATACGGAATATGTGC 1552
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1529 AGTGTTTATGTTTCTCTATGAGAATCATGTAATGTCTCTGATTTGATTCGGAATATGTGC 1588
Query 1553 TGTATGTGTAAGTTGGCCAAATCAAGATTCCTTGAAAT-AGT 1593
||||||||||||| || ||||||||||||||||||||| |||
Sbjct 1589 TGTATGTGTAAGT-GGTCAAATCAAGATTCCTTGAAATTAGT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5