BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480687 Length=1174 Score E Sequences producing significant alignments: (Bits) Value AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein... 1360 0.0 > AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein 3 | chr2:7763975-7765230 REVERSE LENGTH=1256 Length=1256 Score = 1360 bits (736), Expect = 0.0 Identities = 1081/1231 (88%), Gaps = 90/1231 (7%) Strand=Plus/Plus Query 1 ATGGAAGATCAATCGGCGGCGAGATTTATCGGAAAAGTTAATTGGTTTGGCGATGGTAAA 60 ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||| Sbjct 56 ATGGAAGATCAATCGGCGGCGAGATCTATCGGAAAAGTTAGTTGGTTTAGCGATGGAAAA 115 Query 61 GGCTACGGTTTCATTACTCCCGATGATGGAGGCGAAGAGCTTTTTGTTCATCAATCTTCA 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 116 GGCTACGGTTTCATTACTCCCGATGATGGCGGCGAAGAGCTTTTTGTTCATCAATCCTCA 175 Query 121 ATCGTCTCCGATGG-TTACCGTAGCTTAACTGTTGGTGAATCGGTTGAATACTCAATCAC 179 || ||||||||||| || ||||||||| ||| |||||||||||||||||||| |||| | Sbjct 176 ATTGTCTCCGATGGATT-CCGTAGCTTGACTCTTGGTGAATCGGTTGAATACGAAATCGC 234 Query 180 GCTTGGAAGCGACGGGAAGACTAAGGCCGTT-AATGTTACTGCTCCTGGCGGCGGTTCTC 238 ||||||||||||||| |||||||||||| || || ||||||||||| ||||||||||| | Sbjct 235 GCTTGGAAGCGACGGAAAGACTAAGGCCATTGAA-GTTACTGCTCCCGGCGGCGGTTCAC 293 Query 239 TTAATAAGAAGGAAAATAGCTCCCGTGTAAACGGTGGTAGTTGTTTTAATTGCGGTGAGG 298 |||||||||||||||| |||||||||| | ||| |||| |||||||||||||||||||| Sbjct 294 TTAATAAGAAGGAAAACAGCTCCCGTGGATCCGGAGGTAATTGTTTTAATTGCGGTGAGG 353 Query 299 TTGGTCATATGGCTAAGGATTGTGACggtggtggtggtgggaaaagctttggaggtggtg 358 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 354 TTGGTCATATGGCTAAGGATTGTGACGGTGGAAGTGGTGGGAAAAGCTTTGGAGGTGGTG 413 Query 359 gtggtCGTAGATCTGGGGGTGAAGGT-ACCTGTTACGTGTGTGGTGATGTGGGACACTTC 417 |||||||||||||||| || |||||| | |||||| ||||||||||||||||||||||| Sbjct 414 GTGGTCGTAGATCTGGCGGCGAAGGTGA-ATGTTACATGTGTGGTGATGTGGGACACTTC 472 Query 418 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGTGGTGGAGGAGGAGGTGGTGGTC-- 475 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| Sbjct 473 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGCGGCGGAGGAGGAGGAGGTGGTCGT 532 Query 476 C-GTGTTATAGTTGCGGAGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 534 | |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CCGTGTTACAGTTGCGGTGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 592 Query 535 GGGAATAGATACGGAGG---TGGTGGTCGTGGATCTGGCAGTGATGGATGCTACCTTTGT 591 || || ||||||||||| ||||||||||||||||||| |||||||||||||| | ||| Sbjct 593 GGAAACAGATACGGAGGAGGTGGTGGTCGTGGATCTGGCGGTGATGGATGCTACATGTGT 652 Query 592 GGTGGTGTTGGACATTTCGCTAGGGATTGTAGGCAAAATGGCAGTGGAAACGTTGGAGGT 651 |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 653 GGTGGTGTGGGACATTTCGCTAGGGATTGTAGGCAAAACGGCGGTGGAAACGTTGGAGGT 712 Query 652 GGTGGCGGCGGTGGAAACACTTGTTATACCTGTGGCGGAGTTGGCCACATTGC-AAGAGT 710 ||||| || |||||||||||||||||||||||||||||||||||| || ||| Sbjct 713 GGTGG---------AAGCACTTGTTATACCTGTGGCGGAGTTGGCCACATTGCGAA-AGT 762 Query 711 TTGCACCAGCAAGAGACCTGCTGGTGGTG-----------CGTG-TT---ACGAATGTGG 755 |||||||||||||| |||| ||||||||| |||| || |||||||||| Sbjct 763 TTGCACCAGCAAGATACCTTCTGGTGGTGGTGGTGGTGGTCGTGCTTGTTACGAATGTGG 822 Query 756 AGAAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGGTGGTGG 815 || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 AGGAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGG------ 876 Query 816 AGGTGGAGGTGGCGGTGGTAGTGGCAGGTGCTTCAACTGCGGCAAGGAAGGTCACTTTGC 875 |||||| |||||| || | || |||||||| |||||||||||||||||||||||| Sbjct 877 AGGTGGCGGTGGCAGTA--A----CAAGTGCTTCATCTGCGGCAAGGAAGGTCACTTTGC 930 Query 876 TAGGGAATGTTCTTCGGTTACTTAACAAAAAGATGCAAAGAAGA-G--TAATGTTCATAT 932 ||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| Sbjct 931 GAGGGAATGTACTTCGGTTGCTTAACAAAAAGATGCAAAGAAGAAGAGTAATGTTCATAA 990 Query 933 AC-TCT----------ATTAAA-TCTACCTAA-GCTCCGTTTTGGTGACTATAATGTGAT 979 || ||| |||||| ||||||||| ||||| ||||||||||||||||||||| Sbjct 991 ACCTCTTTTGTTTTCTATTAAAATCTACCTAATGCTCCTTTTTGGTGACTATAATGTGAT 1050 Query 980 TGCTAAAGTCGTTTAGGATGTTTACGAATGGTTGTTTTGGGAGATTTTGATCTCT--ATA 1037 |||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 1051 TGCTAAAGTCGTTTAGGATGTTTAAGAATGGTTGTTTTGGGAGTTTTTGATCTCTCTATA 1110 Query 1038 TTACTCTTTTGACTGGTTT-TCGCAAACCTGTTCACTGCTTTTGTTGATGTTGATGCCAT 1096 ||||||||||||||||||| | |||| ||||||||||||||||||||||| |||| Sbjct 1111 TTACTCTTTTGACTGGTTTAT-GCAA-CCTGTTCACTGCTTTTGTTGATG------CCAT 1162 Query 1097 AAGTTTGAGA-CTTGAATGATATGTGTGC------A------GTTTCTTGTTTTTCCTTA 1143 |||||||||| |||||||||||||||||| | ||||||||| ||||||| Sbjct 1163 AAGTTTGAGATCTTGAATGATATGTGTGCTTGCTTATTTACAGTTTCTTGTCTTTCCTTG 1222 Query 1144 CAATGAGTGTGCTTGTATGACTTGAAAATTC 1174 ||||||||||| ||||||||||||||||||| Sbjct 1223 CAATGAGTGTGATTGTATGACTTGAAAATTC 1253 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630225660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5