BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480687
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein... 1360 0.0
> AT2G17870.1 | Symbols: ATCSP3, CSP3 | cold shock domain protein
3 | chr2:7763975-7765230 REVERSE LENGTH=1256
Length=1256
Score = 1360 bits (736), Expect = 0.0
Identities = 1081/1231 (88%), Gaps = 90/1231 (7%)
Strand=Plus/Plus
Query 1 ATGGAAGATCAATCGGCGGCGAGATTTATCGGAAAAGTTAATTGGTTTGGCGATGGTAAA 60
||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||
Sbjct 56 ATGGAAGATCAATCGGCGGCGAGATCTATCGGAAAAGTTAGTTGGTTTAGCGATGGAAAA 115
Query 61 GGCTACGGTTTCATTACTCCCGATGATGGAGGCGAAGAGCTTTTTGTTCATCAATCTTCA 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 116 GGCTACGGTTTCATTACTCCCGATGATGGCGGCGAAGAGCTTTTTGTTCATCAATCCTCA 175
Query 121 ATCGTCTCCGATGG-TTACCGTAGCTTAACTGTTGGTGAATCGGTTGAATACTCAATCAC 179
|| ||||||||||| || ||||||||| ||| |||||||||||||||||||| |||| |
Sbjct 176 ATTGTCTCCGATGGATT-CCGTAGCTTGACTCTTGGTGAATCGGTTGAATACGAAATCGC 234
Query 180 GCTTGGAAGCGACGGGAAGACTAAGGCCGTT-AATGTTACTGCTCCTGGCGGCGGTTCTC 238
||||||||||||||| |||||||||||| || || ||||||||||| ||||||||||| |
Sbjct 235 GCTTGGAAGCGACGGAAAGACTAAGGCCATTGAA-GTTACTGCTCCCGGCGGCGGTTCAC 293
Query 239 TTAATAAGAAGGAAAATAGCTCCCGTGTAAACGGTGGTAGTTGTTTTAATTGCGGTGAGG 298
|||||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||
Sbjct 294 TTAATAAGAAGGAAAACAGCTCCCGTGGATCCGGAGGTAATTGTTTTAATTGCGGTGAGG 353
Query 299 TTGGTCATATGGCTAAGGATTGTGACggtggtggtggtgggaaaagctttggaggtggtg 358
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 TTGGTCATATGGCTAAGGATTGTGACGGTGGAAGTGGTGGGAAAAGCTTTGGAGGTGGTG 413
Query 359 gtggtCGTAGATCTGGGGGTGAAGGT-ACCTGTTACGTGTGTGGTGATGTGGGACACTTC 417
|||||||||||||||| || |||||| | |||||| |||||||||||||||||||||||
Sbjct 414 GTGGTCGTAGATCTGGCGGCGAAGGTGA-ATGTTACATGTGTGGTGATGTGGGACACTTC 472
Query 418 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGTGGTGGAGGAGGAGGTGGTGGTC-- 475
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 473 GCTAGGGATTGTAGGCAAAGCGGTGGTGGAAACAGCGGCGGAGGAGGAGGAGGTGGTCGT 532
Query 476 C-GTGTTATAGTTGCGGAGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 534
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CCGTGTTACAGTTGCGGTGAGGTTGGTCATTTGGCAAAGGATTGTCGTGGTGGTTCTGGT 592
Query 535 GGGAATAGATACGGAGG---TGGTGGTCGTGGATCTGGCAGTGATGGATGCTACCTTTGT 591
|| || ||||||||||| ||||||||||||||||||| |||||||||||||| | |||
Sbjct 593 GGAAACAGATACGGAGGAGGTGGTGGTCGTGGATCTGGCGGTGATGGATGCTACATGTGT 652
Query 592 GGTGGTGTTGGACATTTCGCTAGGGATTGTAGGCAAAATGGCAGTGGAAACGTTGGAGGT 651
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 653 GGTGGTGTGGGACATTTCGCTAGGGATTGTAGGCAAAACGGCGGTGGAAACGTTGGAGGT 712
Query 652 GGTGGCGGCGGTGGAAACACTTGTTATACCTGTGGCGGAGTTGGCCACATTGC-AAGAGT 710
||||| || |||||||||||||||||||||||||||||||||||| || |||
Sbjct 713 GGTGG---------AAGCACTTGTTATACCTGTGGCGGAGTTGGCCACATTGCGAA-AGT 762
Query 711 TTGCACCAGCAAGAGACCTGCTGGTGGTG-----------CGTG-TT---ACGAATGTGG 755
|||||||||||||| |||| ||||||||| |||| || ||||||||||
Sbjct 763 TTGCACCAGCAAGATACCTTCTGGTGGTGGTGGTGGTGGTCGTGCTTGTTACGAATGTGG 822
Query 756 AGAAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGGTGGTGG 815
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AGGAACTGGCCATTTGGCTCGTGACTGTGATCGGAGAGGAAGTGGAAGCAGCGG------ 876
Query 816 AGGTGGAGGTGGCGGTGGTAGTGGCAGGTGCTTCAACTGCGGCAAGGAAGGTCACTTTGC 875
|||||| |||||| || | || |||||||| ||||||||||||||||||||||||
Sbjct 877 AGGTGGCGGTGGCAGTA--A----CAAGTGCTTCATCTGCGGCAAGGAAGGTCACTTTGC 930
Query 876 TAGGGAATGTTCTTCGGTTACTTAACAAAAAGATGCAAAGAAGA-G--TAATGTTCATAT 932
||||||||| |||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 931 GAGGGAATGTACTTCGGTTGCTTAACAAAAAGATGCAAAGAAGAAGAGTAATGTTCATAA 990
Query 933 AC-TCT----------ATTAAA-TCTACCTAA-GCTCCGTTTTGGTGACTATAATGTGAT 979
|| ||| |||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 991 ACCTCTTTTGTTTTCTATTAAAATCTACCTAATGCTCCTTTTTGGTGACTATAATGTGAT 1050
Query 980 TGCTAAAGTCGTTTAGGATGTTTACGAATGGTTGTTTTGGGAGATTTTGATCTCT--ATA 1037
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1051 TGCTAAAGTCGTTTAGGATGTTTAAGAATGGTTGTTTTGGGAGTTTTTGATCTCTCTATA 1110
Query 1038 TTACTCTTTTGACTGGTTT-TCGCAAACCTGTTCACTGCTTTTGTTGATGTTGATGCCAT 1096
||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||
Sbjct 1111 TTACTCTTTTGACTGGTTTAT-GCAA-CCTGTTCACTGCTTTTGTTGATG------CCAT 1162
Query 1097 AAGTTTGAGA-CTTGAATGATATGTGTGC------A------GTTTCTTGTTTTTCCTTA 1143
|||||||||| |||||||||||||||||| | ||||||||| |||||||
Sbjct 1163 AAGTTTGAGATCTTGAATGATATGTGTGCTTGCTTATTTACAGTTTCTTGTCTTTCCTTG 1222
Query 1144 CAATGAGTGTGCTTGTATGACTTGAAAATTC 1174
||||||||||| |||||||||||||||||||
Sbjct 1223 CAATGAGTGTGATTGTATGACTTGAAAATTC 1253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5