BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480692
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17940.1 | Symbols: | Plant protein of unknown function (DU... 946 0.0
> AT2G17940.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr2:7802825-7803947 FORWARD LENGTH=812
Length=812
Score = 946 bits (512), Expect = 0.0
Identities = 688/767 (90%), Gaps = 35/767 (5%)
Strand=Plus/Plus
Query 24 AGTAATGGAGAGAGGCAACGATTGGGGAAGTGGTCGGGCGGAGATAGAGACAAAAGCAGC 83
||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 50 AGTAATGGAGAGAGGAAACGTTTGGAGAAGTGGTCGAGCGGAGATAGAGACAAAAGCAGC 109
Query 84 GTTTGGGTCGGTGAAAGAAGCGGTGGCCATGTTCGGAGAGAAAGTTTTAGCCGGAGAGAT 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 GTTTGGGTCGGTGAAAGAAGCGGTGGCCATGTTCGGAGAGAAAGTTTTAGCCGGAGAGAT 169
Query 144 CTATGCAACTAGGCTTAAAGAGATACGGACAAAGGAAACAAATTTAACTCCGCGT-CATC 202
||||||||||||||||| |||||||||||||||||||||||||| ||||||| || | ||
Sbjct 170 CTATGCAACTAGGCTTAGAGAGATACGGACAAAGGAAACAAATTCAACTCCGAGTTC-TC 228
Query 203 AATCAAGACTACGATCTCTAACACTAGAGCTCAAGCAGACAAAACAAACTCTTACAAGAA 262
||||||||||| |||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 229 TATCAAGACTACCATCTCTAACACTCGAGCTTGAGCAGACAAAACAAACACTGACAAGAA 288
Query 263 CACTACAACTTAACACGATCATGTCCAACAGACTCAAAACTCTAACACAAGAACTCGAAC 322
|||||||||| ||||| | | | ||||||||| |||||||||||||||||||||||||||
Sbjct 289 CACTACAACTAAACACCAGCCTCTCCAACAGAATCAAAACTCTAACACAAGAACTCGAAC 348
Query 323 ATGGGAGGAAGGAGATACAACGGCTCAACAGGACGAGGTCGAGTCGCCTAGATAATCCGG 382
||| | |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 349 TTGGTAAGAAGGAGATACAACGGCTCAGCAGGACGAGGTCGAGTCGCCTAGACAATCCGG 408
Query 383 AGATTGAGGAACTCAAGTTCGTTGAACAGCATCAAACGACGATGTCTAAAGATGTTGAAG 442
|||||||||||||||||||||| |||||||||||||||| || |||||| ||| ||||||
Sbjct 409 AGATTGAGGAACTCAAGTTCGTGGAACAGCATCAAACGATGACGTCTAATGATTTTGAAG 468
Query 443 AAGAGATTGTGACGACGGAGGAGTTGGAGAAGAGGAGACTCGTGACATTCGCGAGCTCGC 502
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 469 AAGAGGTTGTGACGACGGAGGAGTTGGAAAAGAGGAGACTAGTGACATTCGCGAGCTCGC 528
Query 503 CTTTGCTGACACGTGTGATGTCAAGCGTCGGGGACGAAGAGGAGAGGAAGAAGAAAGAGA 562
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 529 CTTTGCTGACACGTGTGATGTCAAGTGTCGGGGACGAAGAGGAGAGAAACAAGAAAGAGA 588
Query 563 ATGATT--G-------TT-T--GGTCAAGAAGACAAAATCAAAGAAGGGTTTTGCTCCGT 610
| |||| | || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 589 AGGATTTTGAGAGAGATTGTTCGGTCAAGAAGACAAAATTAAAGAAGGGTTTTGCTCCGT 648
Query 611 TCATGGGATGGTTTAGAGCAACCCGAGGAAGAGATTGATCtatatatatatatGTCCAAT 670
||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||
Sbjct 649 TCATGGGATGGTTTAGAGCAACCCGTGGATGAGATTGATCTATATATCT------CCAAT 702
Query 671 AATGCTAGGTCATATTGATTGT-ATGATTTTATATCGTTATATAATATAGTTAATGTG-- 727
||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 703 AATGC--GGTCATATTGATTATTATGATTTTAGATCGTTATATAATATAGTTAATGTGCA 760
Query 728 T-AT-C-A-AT--C---C-CGTTCTAAGAGTTTGATGAACAATACTT 764
| || | | || | | |||||||||||||||||||| |||||||
Sbjct 761 TGATGCTATATATCAATCTCGTTCTAAGAGTTTGATGAATAATACTT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5