BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480697
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family prot... 1267 0.0
> AT2G17975.1 | Symbols: | zinc finger (Ran-binding) family protein
| chr2:7822074-7824005 REVERSE LENGTH=1006
Length=1006
Score = 1267 bits (686), Expect = 0.0
Identities = 805/863 (93%), Gaps = 6/863 (1%)
Strand=Plus/Plus
Query 1 GTCGCCGGCGACTGGAGTTTTTCCGGGAAGAGGAAATGGGAGACGGGAGAGAAGGAGATT 60
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1 GTCGCCGGAGACTGGAGTTTTTCCGGGAAGAAGAAATGGGAGACGGAAGAGAAGGAGACT 60
Query 61 GGGAATGTTTAGGTTGTAGAAACAGGAATTATGCGTTTAGATCATTCTGCAATAGATGCA 120
||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||
Sbjct 61 GGGAATGTTTAGGATGCAGAAACAGGAATTATGCGTTTAGATCATTCTGTAACAGATGCA 120
Query 121 AGCAGCCTCGTCTTTTCATGGATAACAATACTTCTTCAAACTCCAAGTGGCTTCCTCGTA 180
|||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 121 AGCAGCCTCGTCTTATCATGGATAATAATACTTCTCCAAACTCTAAGTGGCTTCCTCGTA 180
Query 181 TCGGAGATTGGATCTGCACTGGTTGCACTAACAACAATTATGCATCACGAGAAAAGTGCA 240
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TCGGCGATTGGATCTGCACTGGTTGTACTAACAACAATTATGCATCACGAGAAAAGTGCA 240
Query 241 AAAAATGCGGGCAACCTAAGGAAGTAGCAGCATTGTCAGCACTTGCAATCCCTGGAGCTT 300
| ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AGAAATGTGGGCAATCTAAGGAAGTAGCAGCATTGTCAGCACTTGCTATCCCTGGAGCTT 300
Query 301 CTCTTCAGACTCATCTCCATTACTTCGCTCGTGGGCCTGAGTCA-ATCGATCAATCTGGT 359
||||||| |||||||||||||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 301 CTCTTCAAACTCATCTCCATTACTTCACCCGTGGACCTGAGTCACAT-GATCAACCTGGT 359
Query 360 TCCTTACTTGCATTCTCTAACGCTGCAAATCAAGCTTCGGTTCTTAAAGAATGGAGGAGC 419
|| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 360 TCTTTACTCGCATTCTCTAACGCTACAAATCAAGCTTCGGTTCATAAAGAATGGAGGAGT 419
Query 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGACTGGATTTGCAGATGTGGTTTTCACAATTATTCCTCTCGTATACAGTGCAAAAAG 479
Query 480 TGCAATGAAACAGCTCCACTAGCCCCTGGAACAAAGAGATTAGCATCAGAAGCTTTGGCT 539
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 480 TGCAATGAAATAGCTCCACTAGCCCTTGGTACAAAGAGATTAGCATCAGAAGCTTTGGCT 539
Query 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATTTACAAGCATGCAACCAAATTCAGCG 599
|||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||
Sbjct 540 CATGAATGGGATAGCAAAAGACTGAATCAAGGATATACAAGCATGCAAACACAGTCAGCG 599
Query 600 ATATATG-AGTCTTTTCCTGGTATGAGCCCAGGAAGGATCTCAAATTGGCAACTTCCTCT 658
||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 600 ATATATGCA-TCTTTTCCTGGTATGAGCCTAGGAAGGGTCTCAAATTGGCAACTTCCTCT 658
Query 659 CCCGTTTCTACAGCAACATTCAACACCTGCTTTACTTGGAAAAGGAGCAAAACAATGGCA 718
|||||||||||| ||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 659 CCCGTTTCTACAACAACACTCAACACCTGCTTTACTTGGAATGGGAGTGAAACAATGGCG 718
Query 719 CGATGGAGACTGGATGTGCACAAATTGCAAGAATCACAATTATGCATCTCGATCAGAGTG 778
||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 719 TGATGGCGACTGGATGTGTACAAATTGCAAGAATCACAATTATGCATCACGAGCAGAGTG 778
Query 779 CAATAGGTGCAAGACTACACGAGATATTCTTAATCAGGACATAACTCCAACACAACAATC 838
||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct 779 CAATAGGTGCAAGACTACACGAGATATCCTTGATCAGGACATAACTCCAACAGAACAATC 838
Query 839 TTGAAGAAT-CATGAAGAGTGTT 860
||||| ||| |||||||||||||
Sbjct 839 TTGAA-AATTCATGAAGAGTGTT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5