BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480698
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins ... 2198 0.0
> AT2G17980.1 | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins
superfamily | chr2:7824166-7826597 FORWARD LENGTH=2263
Length=2263
Score = 2198 bits (1190), Expect = 0.0
Identities = 1435/1550 (93%), Gaps = 29/1550 (2%)
Strand=Plus/Plus
Query 579 CAATCTACCTATGTTCGGATGAATGACCCATCAGCAGGGGATAAAGAGATTGAA-GAGAT 637
|||||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||
Sbjct 655 CAATCTACCTATGTTCAAATGAATGACCCATCAGCAGGGGAGAAAGAGATT-AATGAGAT 713
Query 638 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TATCGAAAGGGTCGCTAGTGGTTTGTTTTGTGTGTTGGTAACGCTTGGTGTGGTTCCTGT 773
Query 698 TATCCGGTGCCCTCGTGGTGGACCTGCGGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 757
|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 774 TATCCGATGCCCTAGTGGTGGACCTGCAGAGATGGTGGCGTCTTTGTTGGATCAGAAACT 833
Query 758 GAGGGATCATCTCTTGTCCAAGAATAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 817
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 GAGGGATCATCTTTTGTCCAAGAACAATCTGTTTACTGAAGGTGGCGGTTTCATGAGCTC 893
Query 818 GTTTCAGCGTCCGCTCTTGTGCAT-TTTCGATAGGAACTTTGAGCTCTCGGTTGGGATTC 876
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 894 GTTTCAGCGTCCCCTCTTGTGCATATTT-GATAGGAACTTTGAGCTCTCGGTTGGGATTC 952
Query 877 AGCATGATTTCAGATACCGGCCTCTTGTTCACGATGTTCTCGGGTTAAAGCTGAACCGAT 936
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 953 AGCATGATTTCAGATACCGGCCTCTCGTTCACGATGTTCTCGGGTTAAAGCTCAACCAAT 1012
Query 937 TGAACGTGCAAGGAGAGAAAGGTGGAATGAAATCGTTTGAGCTGGACAGTTCCGACCCAT 996
|||| ||||| ||||||||||| | |||||||||||||||||||||||| |||||||
Sbjct 1013 TGAAAGTGCAGGGAGAGAAAGGACCACCGAAATCGTTTGAGCTGGACAGTTCGGACCCAT 1072
Query 997 TCTGGTCAGCTAACAGTTCTCTAGAGTTTCCAGAAGTCGCTGTGGAGATTGAAACCCAGT 1056
|||||||||| |||||| |||| ||||||||||| |||||||||||||| ||||| ||||
Sbjct 1073 TCTGGTCAGCAAACAGTACTCTGGAGTTTCCAGATGTCGCTGTGGAGATCGAAACACAGT 1132
Query 1057 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAGAACCGGAGGTGGGAGCGGGG 1116
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1133 TGAACAAGTACAAGAGAGACGTTGAAGAGGTTAACAAGAAAACCGGAGGTGGGAGCGGCG 1192
Query 1117 CTGAGTTTGACGGGACAGATCTGATTGGAAACA-CCA-A---A-CATCTCATGAACGCTG 1170
|||||||||| |||||||||||||||||||||| ||| | | |||||||||||| |||
Sbjct 1193 CTGAGTTTGATGGGACAGATCTGATTGGAAACATCCACACCGAGCATCTCATGAACACTG 1252
Query 1171 TGAACTCACTCCCAGAATTAACTGAGAGAAAGCAAGTGATTGACAAACACACCAACATTG 1230
|||| || ||||| || ||||||||| ||||| |||||||||||||||||||||| || |
Sbjct 1253 TGAAATCGCTCCCGGAGTTAACTGAGCGAAAGAAAGTGATTGACAAACACACCAATATCG 1312
Query 1231 CAACCGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1290
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CAACAGCGCTCTTAGGACAGATCAAGGAGAGATCTATTGACGCTTTCACTAAGAAAGAAA 1372
Query 1291 GCGACATGATGATGAGAGGCGGAATCGACAGAACCGAGCTTATGGCTGCTCTGAAAGGCA 1350
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1373 GCGACATGATGATGAGGGGCGGAATCGACAGAACTGAACTTATGGCTGCTCTGAAAGGCA 1432
Query 1351 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACTTGATCTCCACAGAAACCA 1410
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1433 AAGGGACAAAGATGGACAAGCTCCGGTTTGCAATCATGTACCTGATCTCCACAGAAACCA 1492
Query 1411 TAAACCAATCCGAAGTCGAAGCCGTGGAAGCAGCATTGAATGAAGCTGAGGCTGACACAA 1470
|||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1493 TAAACCAATCGGAAGTTGAAGCAGTGGAGGCAGCATTGAATGAAGCTGAGGCTGATACAA 1552
Query 1471 GCGCGTTTCAGTACGTGAAGAAGATCAAATCCTTAAACGTATCTCTTGCAGC-ATCTTCG 1529
| ||||||||||| || ||||| |||||||| ||||||| |||| ||||||| | | ||
Sbjct 1553 GTGCGTTTCAGTATGTAAAGAAAATCAAATCGTTAAACGCATCTTTTGCAGCTA-CATCA 1611
Query 1530 GCAAACTCAGCGAGCAGAAGCAACATTGTAGACTGGGCTGAGAAGCTTTACGGACAGTCT 1589
|| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1612 GCGAATTCAGCTAGCAGAAGCAACATTGTAGACTGGGCCGAGAAGCTTTACGGACAGTCT 1671
Query 1590 ATAAGCGCAGTCACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1649
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ATAAGCGCAGTGACTGCAGGAGTCAAGAATCTGTTATCTAGTGATCAACAATTGGCAGTG 1731
Query 1650 ACTCGAACCGTTGAAGCTTTAACGGAAGGAAAACCAAACCCGGAGATCGATTCTTACCTC 1709
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1732 ACTCGAACAGTCGAAGCTTTAACAGAAGGAAAACCAAACCCGGAGATCGATTCTTACCGC 1791
Query 1710 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCACGTGAAGGGACCG 1769
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1792 TTCCTGGACCCAAGAGCTCCAAAGTCGTCTAGCTCCGGTGGTAGCCATGTAAAAGGACCG 1851
Query 1770 TTTAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAATATGGAAGTTTG 1829
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1852 TTCAGAGAAGCTATAGTGTTCATGATCGGTGGAGGTAACTATGTTGAGTATGGAAGTTTG 1911
Query 1830 CAGGAGCTGACTCAGAGACAGTTAACCGTTAAGAACGTAATTTATGGAGCCACTGAGATT 1889
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1912 CAGGAGTTGACTCAGAGACAGTTAACCGTTAAAAACGTTATTTATGGAGCCACTGAGATT 1971
Query 1890 CTTACCGGAGGTGAATTGGTGGAGCAGCTTGG-CGTTTTGGGAAAGAAGATGGGATTGGG 1948
|||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1972 CTTAACGGAGGTGAGTTGGTGGAGCAGCTTGGAC-TTTTGGGAAAGAAGATGGGATTAGG 2030
Query 1949 AGGTCCGGTCGCTTCAACGTCATTGTCTGGT---CACTGAGTGTTACACACTGTTGCctt 2005
||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||
Sbjct 2031 AGGTCCGGTCGCTTCAACGTCATTGTCTGGTGGTCACTGAGTGTTACTCACTGTTAC-TT 2089
Query 2006 tcatttttcttttgccttttcagagactttttttt-ttAATCTATAAAA-AT----CCCC 2059
|| ||||||||||| ||||| |||| |||||||| ||||||||||||| || ||||
Sbjct 2090 TCTTTTTTCTTTTGGCTTTTGAGAGT-TTTTTTTTATTAATCTATAAAATATAAATCCCC 2148
Query 2060 AGTGGTG--TTATTTAACAAACAGTT--CAGTCTCGTTaaaaaaaTTTCT 2105
||||||| ||||||||||||||||| ||||||||||| || | |||||
Sbjct 2149 AGTGGTGAATTATTTAACAAACAGTTTACAGTCTCGTTATAACATTTTCT 2198
Score = 721 bits (390), Expect = 0.0
Identities = 541/607 (89%), Gaps = 37/607 (6%)
Strand=Plus/Plus
Query 1 ATCACTGATTTCTGGGTTTGAAGTTTCTCTAGATCGATTTTAGATTTAGATCCCTTTGTT 60
|||| |||||| |||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct 20 ATCAGTGATTTTTGGGTTTGAAATTTCTCTAGATCGATTTTGGATTTAGATCTCTTTGTT 79
Query 61 TCTACTGC--TT--T--TT--A--T-CG--TT-C------AG----AG--AGGAATAGCT 94
|||||||| || | || | | || || | || || ||||||||||
Sbjct 80 TCTACTGCTTTTCATCGTTGGATCTGCGTTTTGCAAAGGGAGATACAGAAAGGAATAGCT 139
Query 95 CAGAATTTGACAAGGtttttttGCTCTCTAATCC-ACCGAATCTCAAGCTTCCATGGCTC 153
||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 140 TTGAA-TTGACAAGG----TTT-CTCTCTAATCCAACCGAATCTCAAGCTTCCATGGCTC 193
Query 154 TCAATCTCCGTCAGAAACATACTGAATGTATAATCCGGATGCTGAATCTGAACCAACCTT 213
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 194 TCAATCTCCGTCAGAAACAGACTGAATGTGTAATCCGGATGTTGAATCTGAACCAACCTT 253
Query 214 TGAATCCAAGTGGAACTGCAAACGAAGAAGTTTACAAGATCTTGATCTACGACAGATTCT 273
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || || |
Sbjct 254 TGAATCCAAGTGGAACTGCGAACGAAGAAGTTTACAAGATCTTGATTTACGATAGGTTTT 313
Query 274 GTCAGAACATTCTATCTCCATTGATCCATGTCAAGGATCTGCGTAAACATGGAGTTACAC 333
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 314 GTCAGAACATTCTATCTCCATTGACCCATGTCAAGGATCTGCGTAAGCATGGAGTTACAC 373
Query 334 T-TTACTTTCTCATAGACAAAGATCGA-AGACCCGTTCACGATGTTCCCGCTGTGTACTT 391
| || |||||||||||||||||||||| | ||| ||||| |||||||||||||| |||||
Sbjct 374 TCTT-CTTTCTCATAGACAAAGATCGACA-ACCTGTTCATGATGTTCCCGCTGTCTACTT 431
Query 392 TGTTCAACCCACTGAATCTAACATCCAGAGGATCATAGCTGATGCTTCTAGATCTCTCTA 451
||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 432 TGTTCAACCAACTGAATCCAACCTCCAGAGGATCATAGCCGATGCTTCTAGATCTCTCTA 491
Query 452 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGCAAGCATCTTGAGGAGCTAGC 511
||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 492 CGATACCTTTCATCTGAATTTCTCGTCTTCGATCCCTCGTAAGTTTCTTGAAGAGCTAGC 551
Query 512 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATTT 571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 552 TTCTGGGACTCTTAAATCTGGTTCTGTTGAGAAAGTCTCGAAAGTGCATGATCAGTATCT 611
Query 572 GGAGTTT 578
|||||||
Sbjct 612 GGAGTTT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105370943955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5