BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480699
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1888 0.0
AT4G36105.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 100 3e-20
> AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast
hits to 6129 proteins in 783 species: Archae - 220; Bacteria
- 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses
- 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7826817-7828754
FORWARD LENGTH=1424
Length=1424
Score = 1888 bits (1022), Expect = 0.0
Identities = 1251/1353 (92%), Gaps = 50/1353 (4%)
Strand=Plus/Plus
Query 1 TAATTTGTCTCCGTCTCTACCTTCCATCTCTCTCACCCGCTCTCCTCGG-AA--AC--C- 54
|||||||||| ||||||||||||||||||||||||||| |||||||||| || || |
Sbjct 77 TAATTTGTCTTCGTCTCTACCTTCCATCTCTCTCACCCACTCTCCTCGGAAACCACAGCG 136
Query 55 AC--A--G-C-GACGGACGATAAAGCTTTTGCCTCTAATTTTACTCCTGA-AAATCTGGA 107
|| | | | ||||||||||||| ||||||||||||| ||| ||||| | |||||||||
Sbjct 137 ACGGACGGACGGACGGACGATAAAACTTTTGCCTCTAA-TTTGCTCCT-ACAAATCTGGA 194
Query 108 ATCAGCCGGAGCGAATCTCGAAGCTTATGATCTCTACTTGCTGAAGGGGCTGGGGATGGC 167
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 195 ATCAGCCGGAGCGAATCTCGAAGCTTATGATCTCGACTTGCTGAAGAGGCTGGGAATGGC 254
Query 168 TGGTAAAGAGGAGACTAATGTATCTGCAAAAGGGTCTTTAACCAGGGAAGCCACTGAGAT 227
|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 255 TGGTAAAGAGGAGACTGATGTATCTGCACAAGGGTCTTTAACCAGGGAGGCCACTGAGAT 314
Query 228 ATGGAAGAGTGAGTTGGAATCTCGTCGGTTGCAGATAGATAGTTTAGAAGCTGAACTTGT 287
||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 315 ATGGAGGAGTGAGTTGGAATCTCGCCGGTTTCAGGTAGATAGTTTAGAAGCTGAACTTGT 374
Query 288 GGATGTCAAGGCTTACCTTGAGTTTGGTTCAGAAGAAGATGCCAGAAAGGAATTAGGGGT 347
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 375 GGATGTCAAGGCTTACCTTGAGTTTGGCTCAGAAGAAGATGCCAGAAAGGAGTTAGGAGT 434
Query 348 TCTTTCCGGTAGGGTCAGATCGACTGCAACTATGTTGCGGTATTTGAGATCAAAAGCTAG 407
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 TCTTTCGGGTAGGGTCAGATCGACTGCAACTATGTTGCGTTATTTGAGATCAAAAGCTAG 494
Query 408 AATCTTGGCCATTCCTGATGATCTACCAAATGTGTCATGTGGTGTGGAACAGATT---GA 464
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 495 AGTCTTGGCCATTCCTGATGATCTAGCAAATGTGTCATGCGGTGTGGAACAGATTGAAGA 554
Query 465 ACTGAAAGGATTGAACTTTCTTGAGAAAGATGGTGGTTCATCTTCTTCTGGA-GGGGCTA 523
|||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||
Sbjct 555 ACTGAAAGGATTGAACCTTGTTGAGAAAGATGGTGGTTCATCTTCTTCT-GACGGGGCTA 613
Query 524 GCAACACTAGTCCTGAAACTAGAAGGTACCGTGGTTCCTTGGGTATAGAGGATGGAGCCT 583
| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 614 GGAACACTAATCCTGAAACTAGAAGGTACAGTGGTTCCTTGGGTGTAGAGGATGGAGCCT 673
Query 584 ATACTAATGAGATGCTCCAATCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGA 643
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 674 ATACTAATGAGATGCTCCAGTCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGA 733
Query 644 GGAGGGTTACAGCAGCAGAATCTGAGACGGCTGTTCAAAAAGAGAGGGCACTTTTGGGAG 703
|||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 734 GGAGGGTTACAGTAGCAGAATCTGAGTCTGCTGTTCAAAAGGAGAGGGCACTTTTGGGAG 793
Query 704 AGGAAGAAATCAGTAGGAAGACAATCCAGATCGAAAATTTGTCCTTGAAATTAGAAGAGA 763
|||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 794 AGGAAGAAATCAGTAGGAAGACTATCCAAATCGAAAATTTGTCCGTGAAGTTAGAAGAGA 853
Query 764 TGGAACGATTTGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TGGAACGATTTGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGG 913
Query 824 AATTAGTTGAAGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGCTGT 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 AATTAGTTGAAGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGTTGT 973
Query 884 GTCGTGTGAAGAGAGAGTTCGAGTCGCTTAAAAGCTATGTCAGTACTTTTACCAATGTTA 943
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 974 GTCGTGTGAAGAGAGAGTTCGAGTCGCTTAAAAGCTACGTCAGTACTTTTACCAATGTTC 1033
Query 944 GAGAAACACTTCTTTCGTCCGAGAGACAATTCAAAACCATCGAGGAGCTCTTTGAACGGC 1003
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1034 GAGAAACACTTCTTTCGTCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAACGGT 1093
Query 1004 TGGTCACTAAGACAACACAATTAGAAGGCGAGAAGGCACAAAAGGAGGTTGAAGTTCAGA 1063
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1094 TGGTCACTAAGACGACACAATTAGAAGGGGAGAAGGCACAAAAGGAGGTTGAAGTACAGA 1153
Query 1064 AACTGATGGAGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTC 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 AACTGATGGAGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTC 1213
Query 1124 TAGCTTTGAATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAACTT-GC 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1214 TAGCTTTGAATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGAAATTTGC 1273
Query 1183 TATATCTTTGCATT-TTCTTGAGA-CA------ATT-----CTT-------T-C----GC 1217
| |||||||||||| || ||| | || ||| ||| | | ||
Sbjct 1274 TTTATCTTTGCATTGTTGTTG-GCTCATCTCTTATTTTTTTCTTGAGACAATGCTTTCGC 1332
Query 1218 AGAAGATAGATGA-TGCAATCTTCTTCCTTCATTGTTTTTTGCTTCAAATGTGACATTGT 1276
||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1333 AGAAG-TAGATGAATGCAATCTTCTTCCTTCATTGTTCTTTGCTTCAAATGTGACATTGT 1391
Query 1277 AACTTTT-ATCTGTAGATTATTATGGTTCATGC 1308
|| |||| |||||||||||||||||||| ||||
Sbjct 1392 AATTTTTTATCTGTAGATTATTATGGTTTATGC 1424
> AT4G36105.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: leaf apex, cauline leaf, flower, carpel,
leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G17990.1).
| chr4:17083885-17085120 FORWARD LENGTH=1005
Length=1005
Score = 100 bits (54), Expect = 3e-20
Identities = 95/114 (83%), Gaps = 6/114 (5%)
Strand=Plus/Plus
Query 314 GTTCAGAAGAAGATGCCAGAAAGGAATTAGGGGTTCTT-TCCGGTAGGGTCAGATCGA-C 371
||||||| ||||| || |||||||||||| |||| || | | |||||||| ||| | |
Sbjct 133 GTTCAGAGGAAGACGCAAGAAAGGAATTAAAGGTT-TTGTTAGATAGGGTCAAATC-AGC 190
Query 372 TGCAACTATG-TTGCGGTATTTGAGATCAAAAGCTAGAATCTTGGCCATTCCTG 424
|||||| | | ||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 191 TGCAAC-AAGCTTGAGCTATTTGAGATCAAAAGCTAGAATCTTGGCCGTTCCTG 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5