BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480706
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18030.1 | Symbols: | Peptide methionine sulfoxide reductas... 1650 0.0
> AT2G18030.1 | Symbols: | Peptide methionine sulfoxide reductase
family protein | chr2:7840108-7841823 FORWARD LENGTH=1191
Length=1191
Score = 1650 bits (893), Expect = 0.0
Identities = 1063/1139 (93%), Gaps = 36/1139 (3%)
Strand=Plus/Plus
Query 1 GTTCATATGGAGATTCGTTCCCTGGTTCGAAGCAGCAGCTAGACGAAAACTGTGTAATGG 60
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 44 GTTCATATGGAGTTTCGTTCCCTGGTTCGAAACAGCAGCTAGACGAAAACTGTGTAATGG 103
Query 61 CTTTATCACAGAAGAGGAACCGTATCTTCATTCCTTATACGAATCTCGTCTTCTTCTTCT 120
|| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 104 CTATATCACTGAAGAGGAACCGTTTCTTCATTCCTTATACGAATCTCGTCTTCTTCTTCT 163
Query 121 TCTTGTGTATCTCTCTGCTCGATAAAGCTGTTTGCATCAGGATTTCGAATCAGATCTCGG 180
|||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 164 TCTTGTGTGTCTCTCTGCTCGATAAAACTGTATCCATCAGGATTTCGAATCAGATCTCGG 223
Query 181 ATACTATCGTTGATTCTCCCGATCGTCCTTTGAAATCTGCGGTTTTCGCTCTTGGAAGCT 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATACTGTCGTTGATTCTCCCGATCGTCCTTTGAAATCTGCGGTTTTCGCTCTTGGAAGCT 283
Query 241 TCTGGAGATCGGAGGCTGCGTTTGGTTGTATCAATGGCGTCGTTA-GAACAACCGCCGGT 299
|||||||||||||||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct 284 TCTGGAGATCGGAGGCGGCGTTTGGTTGTATCAATGGCGTCG-TACGAACCTCCGCCGGT 342
Query 300 TACGCCGGTGGAACGAAGACGAATCCGGAGTATAGAAACTTAGGTGATCACGCCGAGTCC 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 343 TACGCCGGTGGAACGAAGACGAATCCGGAGTATAGGAACTTAGGTGATCACGCCGAGTCC 402
Query 360 GTACAGGTTGAATATGATCCAAGGATAATTGGTTATCGTCAGCTCTTAGATGTATTCTGG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 403 GTACAGGTTGAATATGATCCAAGGATAATTGGTTATCGTCAGCTCTTAGATGTATTTTGG 462
Query 420 TCTAGTCATGATTCTAGACAAGTATTTGGACAAGGTCCTGATGTGGGTAACCAATACAGA 479
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 463 TCTAGTCATGATTCTAGACAAGTGTTTGGACAAGGTCCTGATGTGGGTAATCAATACAGA 522
Query 480 TCCTGTATTTTCACTAATTCTACAGAAGAGTTGAGACTGGCTTCTACTAGCAAGGAAAGG 539
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 523 TCCTGTATTTTCACTAATTCTACAGAAGAATTGAGACTGGCTTCTACCAGCAAAGAAAGG 582
Query 540 GAGCAACTTAAAT-CAAGAAGCAGTATTGTCACTACTCAAATTCAACAGCTAGGAACGTT 598
||||||||| ||| ||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 583 GAGCAACTT-AATACAAGAAGCAGTATCGTGACCACTCAAATTCAACAGCTAGGAACGTT 641
Query 599 TTATCGCGCAGAGCCTGATCACCAGAAGTTCGAGCTGAAACAACATCCATTTCTTATTCA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTATCGCGCAGAGCCTGATCACCAGAAGTTCGAGCTGAAACAACATCCATTTCTTATTCA 701
Query 659 GCTAATTGGAAACATGGCAGAAGAAGAGCTCGAGAGATCAGCTCTAGCCACAAAACTAAA 718
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 702 GCTAATTGGAAACATGGTAGAAGAAGAGCTTGAGAGATCAGCTCTAGCCACAAAACTAAA 761
Query 719 CGGTTATGCAGCCGAGCTCTGCCCGTCTAGAATCCAGAAACATATCGACTCTAGAGTTAA 778
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 762 CGGTTACGCAGCCGAGCTCTGCCCGCCTAGAATCCAGAAACATATCGACTCTAGAGTTAA 821
Query 779 TGAGATCATTAGAAAAGGTTGGCCTGTCTTGAAAGACATCTAATATATAAGCCGTGTGAG 838
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 822 TGAGATCATTAGAAAAGGTTGGCCCGTCTTGAGAGACATCTAATATATAAGCCTTGTGAG 881
Query 839 ATCTTCACGCTCTTGGATTTGATTGAT-AGTCTCAGATGTAAGTTTTGGTCCATTCTTTT 897
|||||| || ||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 882 ATCTTCGCGTTCTTGGATTTGATTGCTTAGTCTCAGATGTAAGTTTTGGTTCATTCTTTT 941
Query 898 GGCCAGGAATT-GGTCGCAACAATGTTTATGTCTTACTCTTGCAGTCTTGCCCCTTGAGT 956
||||||||||| |||| |||||||||||||||||||||||||| | || ||||||
Sbjct 942 GGCCAGGAATTTGGTCACAACAATGTTTATGTCTTACTCTTGC---C---CC--TTGAGT 993
Query 957 GGTGATTGGTCAGTGTTTTGTCTTGTTTCT---A---T----------G------CTTTT 994
|||||||| |||| |||||||||||||||| | | | |||||
Sbjct 994 GGTGATTGTTCAGCGTTTTGTCTTGTTTCTTTTAAGATCTCTCAAATAGTATATGCTTTT 1053
Query 995 TGTTTTCTTGTAAGCAGATTCATTTAGACTTTCATTGTATCATTATGGTAGTGATTACCA 1054
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1054 TGTTTTCTTGTAAGAAGATTCAGTTAGACTTTCATTGTATCATTATGGTATTGATTACCA 1113
Query 1055 ATTCATTGatattatatatatatatatatatatatatatatatatatatatatatatat 1113
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ATTCATTGATATTATATATATATATATATATATATATATATATATATATATATATATAT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5