BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480707
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18040.1 | Symbols: PIN1AT | peptidylprolyl cis/trans isomer... 1319 0.0
> AT2G18040.1 | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase,
NIMA-interacting 1 | chr2:7842164-7843870 FORWARD LENGTH=875
Length=875
Score = 1319 bits (714), Expect = 0.0
Identities = 827/879 (94%), Gaps = 17/879 (2%)
Strand=Plus/Plus
Query 1 CGTCAATAATAATTAGGGTAAAGCAAAAATAGTGAAGCAGAGCCGCAAAAACA-TTTTCT 59
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4 CGTCGATAATCATTAGGGTAAAGCAAAAATAGTGAAGCAGAGCCGCAAAAACACTTTTCC 63
Query 60 CAAAATCAACGAAGATAGATTCAGATCGGAAACGAAAGAACGATTCGGTCTCCTCCACAG 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 CAAAATCAACGAAGATAGATTCAGATCGGAAGCGAAAGAACGATTCGGTCTCCTCCACAG 123
Query 120 ATCGAACATCGAAGGAGAAGAAAGACGATCATCACAACAAGCATCGAAAGAAGAGCAAGA 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 124 ATCGAACATCGAAGGAGAAGAAAGACCATCATCACAACAAGCATCGAAAGAAGAGCAAGA 183
Query 180 TGGCGTCGAGAGACCAAGTTAAGGCATCGCACATTTTGATTAAGCATCAAGGATCTCGGA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 184 TGGCGTCGAGAGACCAAGTTAAGGCATCGCACATTTTGATTAAGCATCAAGGTTCTCGGA 243
Query 240 GGAAAGCGTCGTGGAAGGATCCAGAAGGGAAGATTAT-CTTGACTACCACTAGAGAAGCC 298
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 244 GGAAAGCGTCGTGGAAGGATCCAGAAGGGAAGATTATTCT-GACTACCACTAGAGAAGCC 302
Query 299 GCCGTTGAGCAGCTTAAGTCGATCCGTGAAGATATTGTTTCCGGCAAGGCGAACTTCGAA 358
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 303 GCCGTTGAGCAGCTTAAATCGATCCGTGAAGATATTGTCTCCGGCAAGGCGAATTTCGAA 362
Query 359 GAAGTGGCGACTCGTGTTTCTGACTGTAGTTCTGCTAAACGCGGCGGCGATCTTGGTCCC 418
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 363 GAAGTGGCGACTCGTGTTTCTGACTGTAGCTCTGCTAAACGCGGCGGTGATCTTGGTTCC 422
Query 419 TTTGGTCGAGGTCAAATGCAGAAACCATTTGAGGAAGCGACTTACGCACTCAAGGTGGGA 478
|||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 423 TTTGGTAGAGGTCAAATGCAGAAACCATTTGAGGAAGCAACTTACGCGCTCAAGGTTGGA 482
Query 479 GATATAAGCGACATTGTCGATACAGACAGTGGAGTCCACATCATTAAGAGAACAGCTTGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GATATAAGCGACATTGTCGATACAGACAGTGGAGTCCACATCATTAAGAGAACAGCTTGA 542
Query 539 CCTGATCCGATCTAATA-AA--TGTATCGAAGGTGCCAGCTTTGTTTCCCTTCTCTTCTT 595
||| ||| ||||| ||| || ||||| ||||||||| |||| |||||||||||||||||
Sbjct 543 CCTTATCTGATCTGATAGAAAATGTATTGAAGGTGCCTGCTTCGTTTCCCTTCTCTTCTT 602
Query 596 GACCagaagaacatagaagaagaagaataagaagaaCTTAATTCAAGGTTATTGTTATTG 655
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 603 GACCAGAAGAACATAGAAGAAGAAGAATAAGAAGAATTTAATTCAAGGTTATTGTTATTG 662
Query 656 TGGTTTTGATTCTGAAACTGTCTACGAATTTGATACAAACAACCCAAACATATGATAAAA 715
|||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||
Sbjct 663 TGGTTTTGATTCTGAATCTGTCTACGAATTTGATACAA-CT-C--AAACATATGATAAAA 718
Query 716 CCAGACACTCTATCTCATTTCTTCTTAAAG-CTTCATAAGCACATTCCATGTCGTAGACA 774
|||||| ||||||||||||||||||||| |||||||||||| | || |||||||||||
Sbjct 719 TCAGACAAGCTATCTCATTTCTTCTTAAAGGCTTCATAAGCAC-TCCC-TGTCGTAGACA 776
Query 775 GTGATTTGTATAATCATATTTCAGTATCTTTGTCATA-TGTTACTGCAACATTCTGGCAT 833
|||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 777 GTGACTTGTATAATCACATTTCAGTATCTTTGTCATGGTCTTACTGCAACATTCTGGCAT 836
Query 834 CTTTTTTAGTGTTGTCATTTTGCTCTTAAACTTTTGATA 872
||| | |||||||||||||||||||||||| ||||||
Sbjct 837 CTTGT---GTGTTGTCATTTTGCTCTTAAACTCTTGATA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5