BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480711
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846050-784... 1029 0.0
> AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846050-7846884
FORWARD LENGTH=763
Length=763
Score = 1029 bits (557), Expect = 0.0
Identities = 676/729 (93%), Gaps = 25/729 (3%)
Strand=Plus/Plus
Query 1 AGATAGAGACAAGACAAACAAAGCAACACTTTCACTAATCCTCTTATGGCCGAAGAGAAG 60
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1 AGATAGAGACAAGACAAGCAAAGCAACACTTTCACTAATCCTCTAATGGCAGAAGACAAG 60
Query 61 ACCTTGAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTAAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCT 120
Query 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGGCTCTT-AAAGAGAAGAACGGATCAAG 179
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 121 CCATACTTTCAGATGATAAAAGAGGCTTTGATGG-TCCTGAAAGAGAAGAACGGATCAAG 179
Query 180 CCCTTACGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCCTTATGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTT 239
Query 240 CCGTAAAATACTTTCTCTACAGCTTAAAAACTCTGTCACTAAAGGTAAGCTCGTGAAGAT 299
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 CCGTAAAACACTTTCTCTACAGCTTAAAAACTCTGTTGCTAAAGGTAAGCTCGTGAAGAT 299
Query 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGACAACGAGGCTA-CAGGACaaga 358
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 300 CAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGATAACGAGGC-AGCAGGACAAGA 358
Query 359 agaataagaagaatatgaagcaagaagataaagagatcacaaagaGGACTAGGTCTTCTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAATAAGAAGAATATGAAGCAAGAAGATAAAGAGATCACAAAGAGGACTAGGTCTTCTT 418
Query 419 CGACAAGGTCC-AAGAAGAGTATGTCTGTGAATAAACAAGAAAAGATGAGGAAAGCGAAG 477
|||||||| || ||||||| | |||||||||| ||||||||||||| |||||||| ||||
Sbjct 419 CGACAAGG-CCTAAGAAGACTGTGTCTGTGAACAAACAAGAAAAGAAGAGGAAAGTGAAG 477
Query 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGCTGGTAAGAAG--G-CCATGAAAGCT 534
|||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 478 AAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGTTGGTAAGAAGAAGGCCATGAAAGCT 537
Query 535 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGAAGAAACTGTGTGTGAATATGAAGA 594
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 538 TCCGCTGCTTGATCACTGAGGAGGAGGAGAAGAAGATGGAACTGTGTGTGAATATGAAGA 597
Query 595 ATAAGGtttttt-tt-t-tA-GTATCTGTA--A--A-T--G----G-TTTGGTGTGGTCT 638
|||||||||||| || | | ||| || | | | | | | |||||||||||||
Sbjct 598 ATAAGGTTTTTTGTTGTCTCTGTAAATGGATGATGACTTTGTTTTGGTTTGGTGTGGTCT 657
Query 639 CTTTTTGGTTTAAGAGTAAAGAGTCTTCGGATGTATAACTAGTACTACCATGTAATATAC 698
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 CTTTTGGGTGTAAGAGTAAAGAGTCTTCGGATGTATAACCAGTACTACCATGTAATATAC 717
Query 699 TCGAAATAG 707
|| ||||||
Sbjct 718 TCTAAATAG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5