BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480727
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18220.1 | Symbols: | Noc2p family | chr2:7928024-7931851 F... 3511 0.0
> AT2G18220.1 | Symbols: | Noc2p family | chr2:7928024-7931851
FORWARD LENGTH=2363
Length=2363
Score = 3511 bits (1901), Expect = 0.0
Identities = 2187/2321 (94%), Gaps = 35/2321 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGCCAAAGATGATAAAAAGCGTGTGAAGAAGTTGAAATCTAAGAAAGTAGAAGCT 60
||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 69 ATGGGTGCCAAAGATGATAAAAAGCGTGTGAAGAAGTTGAAATCT----AAG-A-AA-CT 121
Query 61 GATGAGGAGCATGAGGAACAGCTC-ATGAGTGTTGAAGAAATGGATGAAGATGATATAGT 119
| || ||| ||||||| ||||| || | |||| ||||||| |||| | ||||||||||
Sbjct 122 -A-GA--AGC-TGAGGAAGAGCTCAAT-AATGTTCAAGAAATCGATGCACATGATATAGT 175
Query 120 TACGGATCAGAAGACCGATAAGAAGCGTGGGAAGAAGGTGAAATCTAAGAAAGCAGAAGC 179
| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 AATGGAGCAGAAGAGCGATAAGAAGCGTGGGAAGAAGGTGAAATCTAAGAAAGCAGAAGC 235
Query 180 TGAGGAGCATGAAGAACAGCTTAAGAGGCTTCAAGAAAAGGA-CGCTGATTTTTATCAGT 238
|||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 236 TGAGGAGCATGAAGAAGAGCTTAAGAGGCTTCAAGAAAAGGATC-CTGATTTTTTTCAGT 294
Query 239 ATATGAAAGAGAATGATGCAGAGCTTTTAAAGTTTGATGCTACTGAAATTGAGGATGATG 298
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 295 ATATGAAAGAGCATGATGCAGAGCTTCTAAAGTTTGATGCTACTGAAATTGAGGATGATG 354
Query 299 CTGATGTTGAACCTGATACTGACTTGGAAGACACTGAAAAGGAAGGTGATGATGAAGCAA 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 CTGATGTTGAACCTGATACTGACCTGGAAGACACTGAAAAGGAAGGTGATGATGAAGCAA 414
Query 359 CAAAGATGGAAATTGCAAAGAAAGTG-AGTGAGCAGAAAACGATTACAGCATCGATGGTT 417
|||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 415 CAAAGATGGAAATTGCAAAGAAAGTGCA-CGTGCAGAAAACGATTACAGCATCGATGGTT 473
Query 418 GATTCATGGAGTAAATCAATCAAAGTTGACGCGAAGCTAGGTGCAGTGCGTTCTATCTTG 477
||| ||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||
Sbjct 474 GATGCATGGAGTAAATCAATCGAAGATGAAGCGAAGCTAGGTGGAGTGCGTTCTATCTTG 533
Query 478 AGAGCTTATAGAACTGCATGTCACTATGGTGATGATACCGGGGACGATCAATCGACAAAG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGAGCTTATAGAACTGCCTGTCACTATGGTGATGATACCGGGGACGATCAATCGACAAAG 593
Query 538 TTCAGCGTTATGTCAAGCGATGTGTTTAATAAGATTATG-TCATACGTTCTGATTGAAAT 596
|| || ||||||||||| || |||||||||||||| ||| | ||| ||||||| ||||||
Sbjct 594 TTTAGTGTTATGTCAAGTGAGGTGTTTAATAAGATAATGAT-ATATGTTCTGAGTGAAAT 652
Query 597 GGACGGGATTCTTCGTAAGTTGTTAAGGTTTCCTGAAGATACTAGAGGAACAAAAGAGAC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GGACGGGATTCTTCGTAAGTTGTTAAGGTTTCCTGAAGATACTAGAGGAACAAAAGAGAC 712
Query 657 TATATTGGACCTGATGAACACCAGGCCTTGGAAGAACTATAATCATTTAGTCAAATCATA 716
||||||||| || | ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 713 TATATTGGAGCTCACAAACACTAGGCCTTGGAAAAACTATAATCATTTAGTCAAATCATA 772
Query 717 TCTCGGGAATTCCCTTCATGTTCTGAACCAGATGACCGACACAGAAATGATAACCTTTAC 776
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCTTGGGAATTCCCTTCATGTTCTGAACCAGATGACCGACACAGAAATGATAACCTTTAC 832
Query 777 TCTGCGCCGCCTAAAGCACTCATCGGTTTTTCTAGCTGCTTTTCCTAGCCTCCTAAGGAA 836
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 833 TCTGCGCCGCCTAAAGCACTCATCGGTTTTTTTAGCTGCTTTTCCTAGCCTCCTAAGGAA 892
Query 837 ATATATTAAGGTTGCACTTCATTTCTGGGGAACTGGTAGTGGCGCGCTCTCTGTTGTTTC 896
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 893 ATATATTAAGGTTGCACTTCATTTCTGGGGAACTGGTAGTGGTGCGCTCCCTGTTGTTTC 952
Query 897 CTTGTTGTTCCTGAGAGATTTGTGCATACGTCTTGGATCTGACTGTGTGGATGACTGTTT 956
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 953 CTTGTTGTTCCTGAGAGATTTGTGCATACGCCTTGGATCTGACTGTGTTGATGACTGTTT 1012
Query 957 CAAGGGAATGTACAAAGCGTATGTGTTGAATTGCCAGTTTGTGAATGCTGATAAATTGCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 CAAGGGAATGTACAAAGCGTATGTGTTGAATTGCCAGTTTGTGAATGCTGATAAATTGAA 1072
Query 1017 GCATATTTCGTTTCTTGGTAATTGCTTCATTGAGCTTCTCGGCACAGATATCTCTGCAGC 1076
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GCATATTTCGTTTCTTGGTAACTGCTTCATTGAGCTTCTCGGCACAGATATCTCTGCAGC 1132
Query 1077 ATATCAGCACGCATTTGTCTTCATAAGGCAATTGGCAATGATTCTGCGTGAAGCGCTTAA 1136
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 ATATCAGCATGCATTTGTCTTCATAAGACAATTGGCAATGATTCTGCGTGAAGCGCTTAA 1192
Query 1137 CACAAAAACAAAAGAAGCATTTCGGAAAGTGTATCAATGGAAATTCATCCATTGCCTTGA 1196
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1193 CACAAAAACAAAAGAAGCATTTCGAAAAGTGTATCAATGGAAATTCATCCATTGCCTTGA 1252
Query 1197 GCTTTGGACTGGAGCTGTTTGTGCCTACAGCTCTCAGTCTGAACTCAGACCAGTTGCTTA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GCTTTGGACTGGAGCTGTTTGTGCCTACAGCTCTCAGTCTGAACTCAGACCAGTTGCTTA 1312
Query 1257 TCCGCTAGCTCAAATAATAACTGGTGTAGCACGACTTGTTCCCACTGCTCGCTACACTCC 1316
||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1313 TCCGCTAGCCCAAATAATAACTGGTGTAGCGCGACTGGTTCCCACGGCTCGCTACACTCC 1372
Query 1317 CCTTAGAATAAGATGTGTTCGTATGCTAAACCGGATTGCTGCTTCGACCGGTACCTTTAT 1376
||||||| ||||||||||||||||||||||| || |||||||| |||| || ||||||||
Sbjct 1373 CCTTAGACTAAGATGTGTTCGTATGCTAAACAGGCTTGCTGCTGCGACTGGCACCTTTAT 1432
Query 1377 ACCTGTCTCAATGCTTCTCGTGGACATGTTAGAGATGAAGGAGCTCAATAGACCTCCCAG 1436
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1433 ACCTGTCTCAATGCTTCTTGTGGACATGTTAGAGATGAAGGAGCTCAACAGACCTCCCAC 1492
Query 1437 TGGAGGTGTTGGCAAAGGTGTAGACTTACGCACACTACTGAAGGTAAGTAAACCAGCAGT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGGAGGTGTTGGCAAAGGTGTAGACTTACGCACACTACTGAAGGTAAGTAAACCAGCAGT 1552
Query 1497 GAAGACAAGAGCGTTTCAGGAGGCATGTGTTTATTCTGTAGTGGAGGAGCTTGTGGAGCA 1556
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1553 GAAGACAAGAGCGTTTCAGGAGGCATGTGTTTATACAGTAGTGGAGGAGCTTGTGGAGCA 1612
Query 1557 TTTGTCTCAGTGGAGTTGTTCCGTCGCTTTCTTTGAACTATCATTTATCCCGACCATAAG 1616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1613 TTTGTCTCAGTGGAGTTGTTCCGTTGCTTTCTTTGAACTATCATTTATCCCGACCATAAG 1672
Query 1617 GCTGCGTAGCTTTTTCAAATCCACCAAAGCTGAGAGGTTTAGGAAAGAAATGAAGCAACT 1676
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1673 GCTGCGTAGCTTTTGCAAATCCACGAAAGCTGAGAGGTTTAGGAAAGAAATGAAGCAACT 1732
Query 1677 CATTAGCCAGATTGAAGCTAACTCAGAGTTTGTCAACAAAAAGAGAGCTTCGATTAAGTT 1736
||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1733 CATCAGCCAGATTGAAGCTAACTCAGAATTTGTCAACAAAAAGAGAGCTTTGATTAAGTT 1792
Query 1737 TCTACCCAATGATCTTGCTGCTGAATCATTCCTTGAGGATGAGAAGAAGGCAGGAAAAAG 1796
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1793 TCTACCCAATGATCTTGCTGCTGAATCATTCCTTGAGGATGAGAAGAAAGCAGGAAAAAC 1852
Query 1797 CCCTCTATTACAATACGTGGAAATTATCCGCCAAAGAGCTCAGCAAAGAAACGAATCGCT 1856
||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1853 CCCTCTATTGCAATATGCGGAAATTATCCGCCAAAGAGCCCAGCAAAGAAACGAATCGCT 1912
Query 1857 GGTGGAATCTGATGTTATTGTGGGAGAGAACTCAGCTGTCTTTGGGAAAAATGCACCAAG 1916
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1913 GGTGGAATCTGATGTAATTGTGGGAGAGAACTCAGCTGTCTTTGGGAAAAACGCACCAAG 1972
Query 1917 CAGTGATGATGAAGATGATGCAGATAGGATCGAAAAGGGTGCTTCAGCTTTCAATTCTTC 1976
|||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 1973 CAGTGATGATGAAGATGATGAAGATAGGATGGAAAAGGGTGCTGCAGCTTTCAATTCTTC 2032
Query 1977 CTGGTTACCAGGAAGTGACTCCaaagaaaaggagccggaggaagagcagacgaaaaagaa 2036
|||||||| |||||||||||||||||||| |||||||| |||||| | |||||||||||
Sbjct 2033 TTGGTTACCGGGAAGTGACTCCAAAGAAAAAGAGCCGGAAGAAGAGAAAACGAAAAAGAA 2092
Query 2037 gaaaaggaagagaggtggtaagagtaaaacagagaagCAGCAGGACGAGCAAGGCTTAGG 2096
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2093 GAAAAGGAAGAGAGGTGGAAAGAGTAAAACAGAGAAGAAGCAGGATGAGCAAGGCTTAGG 2152
Query 2097 AGAAGATGATGTTGTGGAAGATTTTGTGTTGAGTTCTGATGAAGAAGAAGAAGATGATCT 2156
||||||||| |||||||| |||||||||||||||||||||||||| ||||| | |||||
Sbjct 2153 AGAAGATGACGTTGTGGAGGATTTTGTGTTGAGTTCTGATGAAGAGGAAGA-G--GATCT 2209
Query 2157 GTTTGATATTGGAGGAGACAAAGATGAAGATGATGCAGCAGACGAAATTACAGATCCTGA 2216
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2210 GTTTGATATAGGAGGAGACAAAGATGAAGATGATGCAGTAGACGAAATTGCAGATCCTGA 2269
Query 2217 GACCAAGACATCTAATAAGAACTCTaagaagaccaagggcacttacaagacctggcataa 2276
||||||||||||||| |||| || ||| | | |||||| ||||||||||||||
Sbjct 2270 GACCAAGACATCTAAGAAGA-CT--AAG--G-----G--CACTTATAAGACCTGGCATAA 2317
Query 2277 gacttacaagaagaccaagaagaagaagCCCCGAGTAGCTT 2317
| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 2318 GGCTTACAAAAAGACCAAGAAGAAGAAGGCCCGAGTAGCTT 2358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5