BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480728
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18230.1 | Symbols: AtPPa2, PPa2 | pyrophosphorylase 2 | chr... 1301 0.0
> AT2G18230.1 | Symbols: AtPPa2, PPa2 | pyrophosphorylase 2 | chr2:7931923-7934329
REVERSE LENGTH=1004
Length=1004
Score = 1301 bits (704), Expect = 0.0
Identities = 770/800 (96%), Gaps = 11/800 (1%)
Strand=Plus/Plus
Query 1 ACTCTACTGTAACTGCAAAATCTTTTGTTGTTTTCTTTAAACGAAGAGAGAAG-AAG-aa 58
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||
Sbjct 4 ACTCTACTGTAACTGCAAAATC--TTGTTGTTTTC-TTAAACGAAGAGAGAAGAAAGAAA 60
Query 59 -aaaaaaGCGTTACGGATTCTCTTCTTCGGTTTCGCCATTGAAGCTTGAAATTTCATCTG 117
|||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 61 GAAAAAAACGTTACGGATTCTCTGCTTCGGTTTCGCGATTGAAGCTTGAGATTTCATCT- 119
Query 118 TAAGAACATTCGATATGGCTGAGAA-AAACGATGAAGGAAACGCCAAGGGCTATGCTTTC 176
| |||||| |||||||||||| || || |||||||||| |||||||||||||||||||
Sbjct 120 T--GAACATCCGATATGGCTGA-AATCAAGGATGAAGGAAGCGCCAAGGGCTATGCTTTC 176
Query 177 CCTCTCAGGAACCCTAATGTTACTCTGAACGAGAGAAACTTTGCAGCCTTCACTCACAGA 236
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 177 CCTCTCAGGAACCCTAATGTTACGCTGAATGAGAGAAACTTTGCAGCCTTCACTCACAGA 236
Query 237 TCAGCTGCTGCTCATCCTTGGCATGACTTGGAGATTGGTCCAGAAGCTCCTGCTGTTTTC 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TCAGCTGCTGCTCATCCTTGGCATGACTTGGAGATTGGTCCAGAAGCTCCTACTGTTTTC 296
Query 297 AACTGTGTTGTTGAAATTAGCAAAGGTGGAAAGGTTAAGTACGAGCTAGACAAGAACAGT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AACTGTGTTGTTGAAATTAGCAAAGGTGGAAAGGTTAAGTACGAGCTAGACAAGAACAGT 356
Query 357 GGCCTTATTAAGGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCACACAACTACGGT 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 357 GGCCTTATTAAGGTTGATCGCGTTCTCTACTCATCCATTGTGTACCCCCACAACTACGGT 416
Query 417 TTCATTCCTCGAACTATCTGTGAAGACAGTGATCCAATCGATGTCCTGGTACTGATGCAG 476
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 TTCATCCCTCGAACTATCTGTGAAGACAGTGATCCAATGGATGTCCTGGTACTGATGCAG 476
Query 477 GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTGATGCCCATGATT 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 GAGCCTGTGCTAACCGGATCATTCCTCCGTGCCCGTGCTATTGGTCTAATGCCCATGATT 536
Query 537 GATCAGGGTGAAAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTCCGT 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GATCAGGGTGAGAAAGACGACAAGATCATTGCAGTATGTGCTGATGATCCCGAGTTCCGT 596
Query 597 CACTACAGAGACATCAAAGAGCTTCCCCCTCACCGTCTAGCTGAAATCCGTCGCTTCTTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CACTACAGAGACATCAAAGAGCTTCCCCCTCACCGTCTAGCTGAAATCCGTCGCTTCTTT 656
Query 657 GAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGGTTTCCTTCCCGCTCAA 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GAGGACTACAAGAAGAACGAGAACAAGAAAGTCGACGTTGAAGCTTTCCTTCCCGCTCAA 716
Query 717 GCTGCCATAGACGCAATTAAGGACTCCATGGATCTTTACGCAGCTTACATCAAAGCTGGC 776
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GCTGCCATAGACGCTATCAAGGACTCCATGGATCTTTACGCAGCTTACATCAAAGCTGGC 776
Query 777 CTGCAACGCTAATGAAGAAA 796
||||||||||||||||||||
Sbjct 777 CTGCAACGCTAATGAAGAAA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5