BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480729
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18240.1 | Symbols: | Rer1 family protein | chr2:7935285-79... 1360 0.0
> AT2G18240.1 | Symbols: | Rer1 family protein | chr2:7935285-7936721
FORWARD LENGTH=1104
Length=1104
Score = 1360 bits (736), Expect = 0.0
Identities = 873/936 (93%), Gaps = 21/936 (2%)
Strand=Plus/Plus
Query 118 CCATGGAAGACGAACCAGGAAGCGAAAATGAAGGAGACACCATAGTTGCTTCACCACTTG 177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 CCATGGAAGACGAACCAGGAAGCGAAAATGAAGCAGACACCATAGTTGCTTCACCACTTG 239
Query 178 CGAAATGGAGAATTGAATTCTCGAGATCATTTCAGAATTACTTAGACAGATCTGCTCCTA 237
| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 240 CAAAATGGAGAATCGAATTCTCGAAATCGTTTCAGAATTACTTAGACAGATCTGCTCCTA 299
Query 238 ACATTGTTCGAAGATGGCTTGTGACTTTAGTCGCTGCTGTGATCTATATCTATAGGGTTT 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 ACATTGTTCGAAGATGGCTTGTGACTTTAGTCGCTGCAGTGATCTATATCTATAGGGTTT 359
Query 298 ACTCTGTTTACGGATACTTCGTTATCTCTTATGGCTTAGCTACTTATATCTTAAACCTCT 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 ACTCTGTTTATGGATACTTCGTTATCTCTTATGGCTTAGCTACTTATATCTTAAATCTCT 419
Query 358 TGATTGGTTTCCTCTCTCCTAAAGTTGATCCTGAACTTGAAGCTTTGGATCCTGATTCTT 417
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATTGGTTTCCTTTCCCCTAAAGTTGATCCTGAACTTGAAGCTTTGGATCCTGATTCTT 479
Query 418 TACCTGTTGATGAGTCTGATGAGTATAAGCCCTTTGTTCGTCGTCTTCCTGAGTTCAAGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACCTGTTGATGAGTCTGATGAGTATAAGCCCTTTGTTCGTCGTCTTCCTGAGTTCAAGT 539
Query 478 TCTGGTATGCAGCTACTAAGGCATTTGTTGTTGCATTTGTGATGACTTTCTTCTCCTTCT 537
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 540 TCTGGTATGCAGCGACTAAAGCATTTGTTGTTGCATTTGTGATGACATTCTTCTCTTTCC 599
Query 538 TGGATGTGCCTGTGTTCTGGCCAATCTTGTTGTGTTACTGGTTGGTTCTGTATTCTCTCA 597
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
Sbjct 600 TGGATGTGCCTGTGTTCTGGCCGATCTTGTTGTGTTACTGGTTGGTTTTGTATTCTTTAA 659
Query 598 CTATGAAACGCTTAATCGTGCACATGTTCAAGTATAGATACTTTCCTTTCGATGTAAGAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTATGAAACGCTTAATCGTGCACATGTTCAAGTATAGATACTTTCCTTTCGATGTAAGAA 719
Query 658 AGCCTGTAAAGCTGCTCAAGTTTCTTGTTCACAGTTTCCTTACCTTTTTAAGACTCAAGA 717
||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 720 AGCCTGTGAAGCTGCTCAAGTTTCTTGTAAACAGTGTCCTGACCTTTTTAAGACTCAAGA 779
Query 718 -GGGATGGTGGTGGAAATGATAGGCCCAGTAGCAGCAATTCATCTCAGGGAAATGAAAAA 776
||| || ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 AGGG-TGATGGTGGAGATGATAGGCCCAGCAGCAGCAATTCATCTCAGGGAAATGAAAAA 838
Query 777 CAGGATTAGATGTGAACCGTACATCAGGTACTGATCTCTACGTGGTGATAGGCGAAGGAC 836
|| ||||||||| |||| ||| |||||||||||||||| |||||||||||||||||| |
Sbjct 839 CAAGATTAGATGCGAACAGTAGATCAGGTACTGATCTCGACGTGGTGATAGGCGAAGCAA 898
Query 837 GAAAGGATACAAACTAAGAAGAGAAGAATATCAA-GTAAATTGTACTATAGTCATGCTGG 895
|||||||||||||||||| || |||||| ||||| | |||||||| ||||||||
Sbjct 899 GAAAGGATACAAACTAAG--GA------TATCAAAGTAAAATATACTATAGCCATGCTGG 950
Query 896 TGGACTAGGAAAACAAAAGTTCTTGAAGCTTATCAGAACTAAGAAATCTCTCTTATGTTT 955
|||| |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||
Sbjct 951 TGGAATAGGAAAACAAA-GTTCTTGAAGCTTAACAGAACTAAGAAATCTCTCTGA-GTTT 1008
Query 956 TGAGTAAT-----GCATTTTCTGGTTTT--CATTGTAATGTGTAACAGTGTATTT-ACAA 1007
|||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1009 TGAGTAATCTCCTGCATTTTCCGGTTTTTGCATTGTAATGTGTAACAGTGTATTTTACAA 1068
Query 1008 TTATACGTTTAAATGAATTTGGGAATCACATGTAGG 1043
|||||||||||||||||||||||||||||| |||||
Sbjct 1069 TTATACGTTTAAATGAATTTGGGAATCACAAGTAGG 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5