BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480731
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18245.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1816 0.0
> AT2G18245.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:7937282-7939600 FORWARD LENGTH=1486
Length=1486
Score = 1816 bits (983), Expect = 0.0
Identities = 1195/1296 (92%), Gaps = 19/1296 (1%)
Strand=Plus/Plus
Query 1 AGCGATTTTACGAGAAGAACCTTTTGGTTTCTCCCAATCATCCAAAATCCGCCATGGAAG 60
|||||||| ||||||||| | ||||||||||| | |||||||||||||||||||||||||
Sbjct 19 AGCGATTTGACGAGAAGAGCTTTTTGGTTTCTGCGAATCATCCAAAATCCGCCATGGAAG 78
Query 61 CAGCTACAAGAATCTTGAGAACTTCTTCTGCTATCAATCGTCGTCTTCTTCTCAGTAAGC 120
|| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct 79 CAACTACAAGAATCTTGAGTACTTCTTCTGCTCTCAATCGTCTTCTTCTTCTCAGTAAGC 138
Query 121 TTAATCTAAAATCAGATCCCCG---TA-CGA-T---C--A--AGCTACTACACAATGCCG 168
| |||||||||||||||||||| || | | | | | ||||||||||||||||||
Sbjct 139 TCAATCTAAAATCAGATCCCCGTAATATCAATTCCACAAATCAGCTACTACACAATGCCG 198
Query 169 TTTCCAGAGAATCCTCTATCTCCGCCTTTCGTATACGATGCTCTTCGCTTCCACCCAATT 228
|| || || ||||||||||||||||| ||||||||| ||||||||||| || | |||
Sbjct 199 TTACCCGAAAATCCTCTATCTCCGCCGCTCGTATACGGTGCTCTTCGCTCCCTGCGAATG 258
Query 229 CGAATCTCTTCAAATCACTCTTCTTCCTTACGTCAACGTTTCGTTTCGAGAACACCGCCG 288
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 259 CGAATCTCTTCAGATCACTCTTCTTCCTAACGTCAACGTTTCGTCTCGAGAACACCGCCG 318
Query 289 TTCACGCTAACCCATTCCGATCCGAACCTAACGATGGCGTCGCTGTCTGGAACAGAGCTC 348
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 319 TTCACGCTAATCCATTCCGATCCGAACCTAACGACGGCGTCGCCGTCTGGAACAGAGCTC 378
Query 349 CACGGAGT-GTGAACGGAGGTGGAGACGCGGCGATATTCGGCGGG-A--AGGAGAAAGAG 404
|||||| | ||||||||||||||| |||||||||||||||||||| | ||| |||||||
Sbjct 379 CACGGA-TCGTGAACGGAGGTGGAAACGCGGCGATATTCGGCGGGAACGAGGGGAAAGAG 437
Query 405 ACGACCGTGGTTCTTCTCGGTTGGTTGGGAGCGAAAGCGAAACACT-TAAGGAGATACGT 463
||||| |||||||| || |||||| | ||||||||||| ||||| | |||||||||||||
Sbjct 438 ACGACGGTGGTTCTCCTTGGTTGGCTAGGAGCGAAAGCTAAACA-TCTAAGGAGATACGT 496
Query 464 TGAGTGGTACAATTCCAGAGGAATTAACGCCGTTACTTTCACCGTCGACGTTAGGGATTT 523
|||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 497 TGAGTGGTACAACTCCAGGGGAATTAACGCCGTTACTTTCACTGTTGACGTTAGGGATTT 556
Query 524 GCTCCGGTTAGATCTTGGTCGGAGGCTTGAACGACGGATAGCTGAATTTGGGAATGAATT 583
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 557 GCTCCGGTTAGATCTTGGTCGGCGGCTTGAACGAAGGATAGCTGAATTTGGGAATGAATT 616
Query 584 GGTCAATTGGGTATCGGAGAAAGAAGATGATGGTAGAGAGAAATGCTTGGTGTTCCACAG 643
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 617 GGTTAATTGGGTATCGGAGAAAGAAGATGATGGTAGAGAGAAATGCTTGGTGTTTCACAG 676
Query 644 TTTCAGTAACACCGGTTGGCTTGTCTATGGTTCCTTGCTAGAGAGCTTTGTTGGTAGACA 703
|||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 677 TTTCAGTAACACTGGTTGGCTTGTATATGGTGCCTTGCTAGAGAGCTTCATTGGTAGACA 736
Query 704 AGATTTAGTAGAAAAGATTAAAGGTTGTATCATCGACTCGGGAGGAGCAGATCCTCTAGA 763
|||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 737 AGATTTAGTAGAAAGGATTAAGGGTTGTATCATTGACTCGGGAGGAGCAGATCCTCTTGA 796
Query 764 TACTAAGATTTGGGCAGCCGGGTTTACTGCTGCTATACTGAAGAAGCGGAGCTCCACCAT 823
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 797 TACTAAGATTTGGGCAGCGGGGTTTACCGCGGCTATACTGAAGAAGCGTAGCTCCACCAT 856
Query 824 AACCACAGAACCAAACAGTCCCATAAAAGAAGACGATGCTTCAACCCCACAAAAGAAAGA 883
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 857 AACCACAGAACCAAACAGTCCCATAAAAGAAGAGGATGCTTCAACACCACAAAAGAAGGA 916
Query 884 ACCTTTAGGAATCGAAAACATGATGCTATCATCTCTAGAGAAACTTTTCCCCATCTTCTT 943
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 917 ACCTTTAGGAATCGAAAACATAATGCTATCATCTCTGGAGAAACTCTTCCCCATCTTCTT 976
Query 944 AAACCTCCCGGAAGTCAATACGAGGCTAACGAAAATCATCCAAAAACTATATGAGAACCA 1003
||||| ||| || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 977 AAACCACCCAGACGTCAATACGAGGCTAACAAAAATCATTCAAAAACTATATGAGAACCA 1036
Query 1004 TCCTCCATGTCCTCAGCTCTATCTTTACAGCTCAGGGGACAAAGTTGTTCCGTCTCATTC 1063
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1037 TCCTCCATGTCCTCAGCTCTATCTTTACAGCTCCGGGGACAAAGTTGTTCCATCTCATTC 1096
Query 1064 CGTTGAGCTCCGCATCCGAGAACAACAGAAGATGGGAAGAAACATACATTCTTTCAATTT 1123
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1097 CGTTGAGCTCCGCATCCGAGAACAACAGAAGATTGGAAGAAAGATACATTCTTTCAATTT 1156
Query 1124 CAAGTTCTCTCCTCATGTCGATCATTACCGGAACTTTCCTGACTTGTATTCCTCACAGCT 1183
||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CAAGTCCTCTCCTCACGTGGATCATTACCGGAACTTTCCTGACTTGTATTCCTCACAGCT 1216
Query 1184 TCAGAACTTCTTGCAAGAATGCCTCACACCAACAAAACGACAAGCTCTGTGACATTGGAA 1243
||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1217 TCAAAACTTCTTGCAAGAATGCTTCACACCAACAAAACAACAAGCTCTGTGACTTTGGAA 1276
Query 1244 CATAtttttttGCAGAATCTTTGTAGCCGTGGTTTG 1279
||| |||||||||||||| ||||||||| |||||||
Sbjct 1277 CATCTTTTTTTGCAGAATATTTGTAGCCTTGGTTTG 1312
Score = 141 bits (76), Expect = 2e-32
Identities = 93/101 (92%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 1277 TTGATGATAGAACAAGATAATCCGAAGGAGACAGAAACTCGAAATTGTGTCGACGTGCTA 1336
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1346 TTGATGATAGAACAAGATAATCCGAAGGAGACAGAAACTCCAAACTGTGTCGACGAGCTA 1405
Query 1337 CTGAGGCTGGGATTGTTTCTGAAACTCTTATATTGTTGTTG 1377
||||| | | ||| |||||||||||||||| ||||||||||
Sbjct 1406 CTGAG-CAGAGATAGTTTCTGAAACTCTTAGATTGTTGTTG 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5