BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480732
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18250.1 | Symbols: ATCOAD, COAD | 4-phosphopantetheine aden... 1038 0.0
> AT2G18250.1 | Symbols: ATCOAD, COAD | 4-phosphopantetheine adenylyltransferase
| chr2:7939907-7941678 FORWARD LENGTH=828
Length=828
Score = 1038 bits (562), Expect = 0.0
Identities = 705/773 (91%), Gaps = 13/773 (2%)
Strand=Plus/Plus
Query 35 GAATTCGA-TTCTTGGGTGTGAAGTCTCCAAATCA-AATAATTCAGAGACGAACCCTAAA 92
||| |||| || |||| | | |||||||||||||| || ||||||||||||| |||||||
Sbjct 61 GAACTCGATTTATTGGTTCTAAAGTCTCCAAATCAGAA-AATTCAGAGACGAGCCCTAAA 119
Query 93 TGGCAGCTACTGAAGATTCGAAGATGTCTCCGGCGAATTCGTTTGGTGCTGTCGTTCTCG 152
|||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TGGCAGCTCCGGAAGATTCAAAGATGTCTCCGGCGAATTCGTTTGGAGCTGTCGTTCTCG 179
Query 153 GCGGTACGTTTGATCGATTACACGATGGGCATCGAATGTTCCTCAAGGCAGCGGCGGAGC 212
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 GCGGTACGTTTGATCGATTACACGATGGGCATCGAATGTTCCTCAAGGCGGCGGCGGAGC 239
Query 213 TGGCTAGGGATCGGATCGTAGTGGGAGTATGTGATGGCCCAATGTTGACGAACAAGCAAT 272
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 240 TGGCCAGGGATCGGATCGTAGTGGGAGTCTGTGATGGCCCAATGTTGACGAAAAAGCAAT 299
Query 273 TCTCTGAGATGATACAACCCATTGAAGAAAGGATGCGTAATGTGGAGAACTATGTCAAGT 332
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TCTCTGACATGATTCAACCCATTGAAGAAAGGATGCGTAATGTGGAGACCTATGTCAAGT 359
Query 333 CTATCAAGCCCGAGCTGGTTGTACAAGCTGAACCCATTAGTGATCCATATGGTCCTTCTA 392
|||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 360 CTATCAAGCCCGAGCTGGTTGTACAAGCCGAACCCATTACAGATCCATATGGCCCTTCTA 419
Query 393 TCGTCGATGAAAATTTGGAAGCTATTGTAGTCAGCAAGGAGACGTTACCCGGTGGCTTGT 452
|||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 420 TCGTAGATGAAAATTTGGAAGCTATTGTTGTCAGCAAAGAGACATTACCTGGTGGCTTGT 479
Query 453 CAGTTAACAGAAAAAGAGCAGAAAGAGGTCTTTCACAACTTAAGATTGAAGTTGTGGAAA 512
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CAGTTAACAGAAAAAGAGCAGAAAGAGGTCTTTCACAGCTTAAGATTGAAGTTGTGGAAA 539
Query 513 TAGTTTCTGATGGATCAAGTGGGAACAAGATAAGTTCGAGTACTCTGAGAAAGTTGGAAG 572
|||||||||||||||| ||||| || ||||||||||| |||||||||||||| |||| |
Sbjct 540 TAGTTTCTGATGGATCGAGTGGAAATAAGATAAGTTCAAGTACTCTGAGAAAAATGGAGG 599
Query 573 CTGAGAAAGCCGA-TAAACAAAAACAACCGGCAGAAGAAAAAGCATCATGAACTCATCAT 631
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 CTGAGAAAGC-GTCTAAACAAAAACAACCAGCAGAAGAAAAAGCATCATGAACTCATCAT 658
Query 632 ACaaaaaaaaaTCTCAACTTTGGTTGTAATTTAATACGCTTCTGTATACCCAAAATGCTG 691
| | ||| ||||||||||| ||||||||||||| ||| ||||||| ||||||||||
Sbjct 659 ATATAAAC---TCTCAACTTTGCATGTAATTTAATACTCTTTTGTATACTCAAAATGCTG 715
Query 692 TAAATTGGCTTAAACAGATCAATAAAGGTCCAAGCTTTGCATTCCCTAACTCGAAACAAG 751
|||||||| | || ||||||||||||||||||||||||||||| ||||||| || | |
Sbjct 716 TAAATTGGATGCAATAGATCAATAAAGGTCCAAGCTTTGCATTCTTTAACTCGGAATATG 775
Query 752 AACTAGTCATATGTGAAAATCAACTTT-GGTTCAATAAAGGTCTAGACTTTTT 803
|||||||| | || |||||||||||| ||| ||||||||||| |||||||||
Sbjct 776 AACTAGTCCT--GT-AAAATCAACTTTTGGT-CAATAAAGGTCAAGACTTTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5