BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480733
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18260.1 | Symbols: SYP112, ATSYP112 | syntaxin of plants 11... 1709 0.0
> AT2G18260.1 | Symbols: SYP112, ATSYP112 | syntaxin of plants
112 | chr2:7942153-7943388 FORWARD LENGTH=1141
Length=1141
Score = 1709 bits (925), Expect = 0.0
Identities = 1025/1070 (96%), Gaps = 20/1070 (2%)
Strand=Plus/Plus
Query 1 ATGAATGATCTGATGACAAAATCGTTCTTAAGTTATGTTGAATTGAAGAAACAAGCGAAG 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 28 ATGAATGATCTGATGACAAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAAGCGAGG 87
Query 61 AAAGATCTGGAATCTGATCGAGATTTGGAGAAAGGTGAAGACTTTAACTTCGATTTCAGT 120
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 ACAGATATGGAATCTGATCGAGATTTGGAGAAAGGTGAAGACTTTAACTTCGATTTCAGT 147
Query 121 CCAGCGGATGAAGAAAACCTCTCTGGTTTCTTTCAAGAAATCGAAACCATCAAAACCCTA 180
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CCCGCAGATGAAGAAAACCTCTCTGGTTTCTTTCAAGAAATCGAAACCATCAAAACCCTA 207
Query 181 ATCGAAGAGATCACTCATCTCTTACTCGATCTCCAAAACCTAAACGAAGAAACCAAATCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 208 ATCGAAGAGATCACTCATCTCTTACTCGATCTCCAAAACCTAAACGAAGAGACCAAATCA 267
Query 241 ACTCACAGTACCAAGATCTTACGTGGGTTAAGAGACAGAATGGAATCAAACATCGTCACC 300
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 268 ACTCACAGCACCAAGATCTTACGTGGGTTGCGAGACAGAATGGAATCAAACATCGTCACC 327
Query 301 ATCTCTCGTAAGGCCAACACAGTCAAAACCCTAATCGAGACTCTTGAGAAGAGAAACGTT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 328 ATCTCTCGTAAGGCCAACACAGTCAAAACCCTAATCGAGACTCTGGAGAAGAGAAACGTT 387
Query 361 GCGAATCGTACGAGTTTCAAGGAAGGATCTTGCGTGGATAGGACAAGAACTTCGATAACT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 388 GCGAATCGTACGAGTTTCAAGGAAGGATCTTGCGTGGACAGGACAAGAACTTCGATCACT 447
Query 421 AATGGAGTTAGAGCGAAACTGAGAGAGACGATGAGTGAGTTTCATCGATTGAGGGAAAGA 480
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 448 AATGGAGTTAGAAAGAAACTTAGAGATACGATGAGTGAGTTTCATCGATTGAGGGAGAGA 507
Query 481 ATCTTTGCTGATTACAGAGAAGATCTCAAAAGGAAGTATTTTTTAGCGACTGGTGAAGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 ATCTTTGCTGATTACAGAGAAGATCTCAAAAGGAAGTATTTTTTAGCGACTGGTGAAGAA 567
Query 541 CCAAGTAATGAAGACATGGAGAAGATGATCTCTGGATCTGGGTCTTGTTCTGATTTGGTT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 568 CCAAGTAATGAAGACATGGAGAAGATGATCTCTGGATCAGGGTCTTGTTCTGATTTGGTT 627
Query 601 AAGACATTTGAAGTGAAGCCAGAGATGGATTTGAAGACTAAAGAGAGACATGAAGCAGTG 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AAAACATTTGAAGTGAAGCCAGAGATGGATTTGAAGACTAAAGAGAGACATGAAGCAGTG 687
Query 661 AATGATATCAAGAGAAGTCTTAATAGGCTTCATCAAGTGTTTCTTGACATGGCTGTTCTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AATGATATCAAGAGAAGTCTTAATAGGCTTCATCAAGTGTTTCTTGACATGGCTGTTCTT 747
Query 721 GTTGAGACTCAAGGAGATCGAATTGATGACATTGAAGCTAATGTTGCTAATGCAGGGAGC 780
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 748 GTTGAGACTCAAGGAGATCGTATTGATGACATTGAAGCTAATGTGGCTAATGCAGGGAGC 807
Query 781 TTTGTGAGTGGAGGGACTAATAGTTTGTACTATGCTAATCAGATGAAGAAGAAGACTAAG 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TTTGTGAGTGGAGGTACTAATAGTTTGTACTATGCTAATCAGATGAAGAAGAAGACTAAG 867
Query 841 AGTTGGGTTCTTTGGGTTTCGATTTTGGGTGTTCTTATTCTTCTTGTGTGTGTCATCTCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 AGTTGGGTTCTTTGGGTTTCGATTTTGGGTGTTCTTATTCTTCTTGTGTGTGTCATCTCA 927
Query 901 ATGCTTGCTTCTCGTTAAGAGATTTGGTTG-TT-CTT-T-T------G---TT---CTAG 944
|||||||||||||||| |||||||||||| || ||| | | | || ||||
Sbjct 928 ATGCTTGCTTCTCGTT--GAGATTTGGTTGCTTTCTTGTGTTCTTTTGCCATTGTTCTAG 985
Query 945 TTTTATTT-CATTAGATGTTTTCATGATTTGTGTATCAGAA-GAAACTTCAGGTTTTGTA 1002
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 986 TTTTATTTTCATTAGATGTTTTCATGATTTGTGTATCAGAATGAAACTTCAGGTTTTGTA 1045
Query 1003 TTCATGAATCTTTGTCCACAAATCTTTTGTGTTGATCATATTAATGTCTA 1052
|||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1046 TTCATGAATCTTTGTCCACAGATCTTTTGTGTTGATCATGTTAATGTCTA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51590468969
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5