BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480735
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18280.1 | Symbols: AtTLP2, TLP2 | tubby like protein 2 | ch... 2209 0.0
AT2G18270.1 | Symbols: | unknown protein; Has 2 Blast hits to ... 327 2e-88
AT2G18290.1 | Symbols: APC10 | anaphase promoting complex 10 | ... 163 5e-39
> AT2G18280.1 | Symbols: AtTLP2, TLP2 | tubby like protein 2 |
chr2:7945999-7948446 FORWARD LENGTH=1900
Length=1900
Score = 2209 bits (1196), Expect = 0.0
Identities = 1388/1481 (94%), Gaps = 11/1481 (1%)
Strand=Plus/Plus
Query 440 ATTGCAGTTATTGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 499
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ATTG-AGCTATCGGGGAGTTTTGTGGTATGCTGAAAAGAGATGTCTTTGAAAAGCATCCT 465
Query 500 TCGTGATTTGAAGGAAGTGAGAGATGGACTTGGAGGCATCTCCAAGCGAAGCTGGTCAAA 559
||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 466 TCGTGATCTGAAGGAAGTGAGGGATGGACTTGGAGGCATCTCCAAGAGAAGCTGGTCAAA 525
Query 560 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACCGGAAAACATCCCGCAGAGCCC 619
|||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 526 GTCGTCTCACATTGCTCCTGATCAAACAACTCCACCACTGGATAACATACCACAGAGCCC 585
Query 620 ATGGGCTTCGTTACCACCTGAGTTGCTTCATGACATTATCCGGAGGGTTGAAGAGAGTGA 679
||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 ATGGGCTTCTTTGCCGCCTGAGTTGCTTCATGACATTATCTGGAGGGTTGAAGAGAGTGA 645
Query 680 GACTGCTTGGCCCGCTCGAGCTGCTGTTGTCTCTTGTGCTTCTGTCTGTAAATCATGGAG 739
||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 646 GACAGCTTGGCCCGCTCGAGCTGCCGTTGTCTCTTGTGCTTCAGTATGTAAATCATGGAG 705
Query 740 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCTGTGTGGGAAGCTCACTTTTCCAAT 799
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 706 AGGAATCACTATGGAGATTGTGAGGATCCCTGAGCAGTGTGGGAAGCTCACTTTTCCAAT 765
Query 800 CTCATTAAAACAGCCGGGGCCGCGAGACTCTCCAATTCAATGCTTTATTAAGAGGAACAG 859
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 766 CTCATTGAAACAGCCGGGGCCTCGAGACTCTCCAATTCAATGTTTTATTAAGAGGAACAG 825
Query 860 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCTGAGACAGAGAACGACAA 919
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 826 AGCAACAGCTACATACATTCTCTATTATGGTTTGATGCCTTCGGAGACTGAGAACGACAA 885
Query 920 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACGTGCACGGACTTTATAATCTCGCT 979
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 886 ACTGTTGTTAGCAGCAAGAAGGATTAGAAGAGCGACATGCACAGACTTTATAATCTCCCT 945
Query 980 ATCGGCGAAA-AACTTCTCACGGAGCAGCAGCACATATGTTGGCAAACTAAGGTCTGGTT 1038
||| || ||| |||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 946 ATCTGC-AAAGAACTTCTCACGGAGCAGCAGTACTTATGTTGGCAAATTAAGGTCTGGTT 1004
Query 1039 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAACACAAGGCC 1098
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1005 TTCTGGGAACCAAGTTCACAATATATGACAACCAAACAGCATCATCCACAGCACAAGCCC 1064
Query 1099 AACCTAACCGAAGACTTCACCCCAAGCAAGCGGCCCCAAAAGTACCTGCTAATAGCTCTA 1158
|||||||||||||||| ||||| || |||||||| || ||| ||||| | ||||||||||
Sbjct 1065 AACCTAACCGAAGACTCCACCCGAAACAAGCGGCTCCTAAACTACCTACGAATAGCTCTA 1124
Query 1159 CTGTAGGAAATGTAACCTATGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1218
| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CCGTAGGAAACATAACCTACGAGCTCAATGTTCTTCGCACAAGGGGACCTAGAAGAATGC 1184
Query 1219 ATTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCATCAGTAGTTCAAG 1278
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1185 ACTGCGCTATGGATTCTATACCCCTCTCTTCTGTTATTGCTGAACCGTCAGTAGTTCAAG 1244
Query 1279 GCCTAGAGGAGGAAGTCTCTTCCTCGCCTTCACCAAAAGGAGAAACCAGCACAACAGACA 1338
|| |||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1245 GCATAGAAGAGGAAGTCTCTTCCTCTCCTTCACCAAAAGGAGAAACCATCACAACAGACA 1304
Query 1339 AAGAGGTACCTGAT-ATTACTCCAAGCTTAAGGGACCAGCCGCTAGTTCTCAAAAACAAA 1397
||||| | |||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1305 AAGAGATTCCTGATAATT-CTCCAAGCTTAAGGGACCAACCGCTAGTTCTCAAAAACAAA 1363
Query 1398 TCCCCAAGATGGCACGAGCAATTGCAGTGTTGGTGCCTCAACTTCAAGGGAAGAGTGACC 1457
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1364 TCCCCAAGATGGCATGAGCAGTTGCAGTGCTGGTGCCTCAACTTCAAGGGAAGAGTGACT 1423
Query 1458 GTGGCTTCAGTCAAGAATTTCCAGCTTGTTGCAGACATTGACGCTGCTTTGGTTGCGCCG 1517
||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1424 GTGGCTTCAGTTAAGAATTTCCAGCTTGTTGCAGAGATTGACGCTTCTTTGGATGCGCCG 1483
Query 1518 CGTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATAGGTAAGGACATTTTTACC 1577
| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 1484 CCTGAAGAACATGAGAGGGTGATCTTACAGTTTGGCAAAATCGGTAAGGATATTTTCACC 1543
Query 1578 ATGGATTATCGCTACCCTCTCTCTGCTTTCCAAGCCTTTGCTATATGCATCAGCAGCTTT 1637
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1544 ATGGATTATCGCTACCCTCTATCTGCTTTTCAAGCCTTTGCTATATGCATTAGCAGCTTT 1603
Query 1638 GACACCAAACCGGCATGTGAAGGGTAAA-GTTAA--C-CCGAGTTAAATCCATCTCTGCA 1693
|||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1604 GACACCAAACCGGCATGTGAAGGGTAAACTTTAACCCACCGAGTTAAATCCATCTCTGCA 1663
Query 1694 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 AATCATCATAGAAGGCTTTTCTTATCTTTAGGTTTCAATGTATCAATCCACGAAAAGCTC 1723
Query 1754 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAACCCATCTCTCCAAATTC 1813
||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||
Sbjct 1724 TTTGTATGTAGATTGTTGTAGCTCTTTTGAACTATGCTTTAAATCCGTATCTCCAAAATC 1783
Query 1814 ACCATGTCAAAAGTTTGATGG-GGCTTTTGGTGGATAAGCTTAATGAAGTTATGATTGTT 1872
|| ||||||| |||| |||| || | ||||| |||||||||| ||||||||||||||||
Sbjct 1784 ACTGTGTCAAATGTTTTATGGAGG-TCTTGGTTGATAAGCTTACTGAAGTTATGATTGTT 1842
Query 1873 ATATCCAATGTAATATATAAACAGAAGCCATTACACAACAA 1913
||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1843 ATATCCAATGTAATATATAAACAAAAGCCATTGCACAACAA 1883
Score = 568 bits (307), Expect = 1e-160
Identities = 370/399 (93%), Gaps = 10/399 (3%)
Strand=Plus/Plus
Query 1 GAGTTTCTCTCTGCCTTTAAACGTTTGTTTGAAAACTATAAGAAACAGCGAAGACTTCGG 60
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2 GAGTTTCTCTCTGCCTTTAAACGTTTCATTGAAAACTATAAGAAAAAGCGAAGACTTCGG 61
Query 61 ATCCTTTTTTCTCTCAATTTGTAAGAAGAGAGAGAGGTTCAGGTTCG-TTTGGTGGAGAC 119
||||||| || ||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 62 ATCCTTTCTT-TCTCAATTTGTAACAAGAGAGAGAGGTTCAGGTTCGTTTTGGTGGTGAC 120
Query 120 CACTCCTTTTATTCACCTACGGTGAGATCGGCGGCGGAGTC-AGAAGACGGCGATAACGC 178
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 121 CACTCC-TTTATTCACCTACGGTGAGATCGGCGGCGGAGTCTAGACGACGGCGATAACGC 179
Query 179 CGGTGACGGACGGAATCATGTCAAGATAGTCGTCACTTGCGAATTCGTTCTTCTT-CCCG 237
||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| ||||
Sbjct 180 CGGTGACCGACGGAATCATGTTAAGATA---GTCACTGGCGAATTCGTTCTTCTTCCCCG 236
Query 238 GAGACGACGAGCATCGAAGAATCTGTCAAGAAACAGCTATGCTTGTCTCTGTTTCTGCGT 297
|||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 237 GAGACGACAAGCATCGAAGAATCTGTTTAGAGACAGCTATGCTTGTCTCTGTTTCTGCGT 296
Query 298 TTTCTCTCTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCCGCCGCTGATCTCATCTTC 357
||||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 297 TTTCTCTTTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCTGCCGCCGATCACATCTTC 356
Query 358 CAGTTTCCAGAGATT-TCAAAGTTTTTGTCTTTTGATCC 395
||||||||||||||| | |||| ||||||||||||||||
Sbjct 357 CAGTTTCCAGAGATTCT-AAAGCTTTTGTCTTTTGATCC 394
> AT2G18270.1 | Symbols: | unknown protein; Has 2 Blast hits to
2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:7946158-7946406 REVERSE LENGTH=249
Length=249
Score = 327 bits (177), Expect = 2e-88
Identities = 218/237 (92%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 161 AGAAGACGGCGATAACGCCGGTGACGGACGGAATCATGTCAAGATAGTCGTCACTTGCGA 220
||| ||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||
Sbjct 247 AGACGACGGCGATAACGCCGGTGACCGACGGAATCATGTTAAGATA---GTCACTGGCGA 191
Query 221 ATTCGTTCTTCTT-CCCGGAGACGACGAGCATCGAAGAATCTGTCAAGAAACAGCTATGC 279
||||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 190 ATTCGTTCTTCTTCCCCGGAGACGACAAGCATCGAAGAATCTGTTTAGAGACAGCTATGC 131
Query 280 TTGTCTCTGTTTCTGCGTTTTCTCTCTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCC 339
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 130 TTGTCTCTGTTTCTGCGTTTTCTCTTTCCGATCTTGTCTCTCGGATCCGGTGAAGAAGCT 71
Query 340 GCCGCTGATCTCATCTTCCAGTTTCCAGAGATT-TCAAAGTTTTTGTCTTTTGATCC 395
||||| |||| |||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 70 GCCGCCGATCACATCTTCCAGTTTCCAGAGATTCT-AAAGCTTTTGTCTTTTGATCC 15
> AT2G18290.1 | Symbols: APC10 | anaphase promoting complex 10
| chr2:7948306-7950329 REVERSE LENGTH=1028
Length=1028
Score = 163 bits (88), Expect = 5e-39
Identities = 146/172 (85%), Gaps = 11/172 (6%)
Strand=Plus/Minus
Query 1790 CTTTAAACCCATCTCTCCAAATTCACCATGTCAAAAGTTTGATGG-GGCTTTTGGTGGAT 1848
||||||| || | |||||||| |||| ||||||| |||| |||| || | ||||| |||
Sbjct 1028 CTTTAAATCCGTATCTCCAAAATCACTGTGTCAAATGTTTTATGGAGG-TCTTGGTTGAT 970
Query 1849 AAGCTTAATGAAGTTATGATTGTTATATCCAATGTAATATATAAACAGAAGCCATTACAC 1908
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 969 AAGCTTACTGAAGTTATGATTGTTATATCCAATGTAATATATAAACAAAAGCCATTGCAC 910
Query 1909 AACAATATGTGAAACTATAACTAATCTGATTATAGACTCTTCCTGTGGTATC 1960
||||| | | || | |||||||||||||||||||||| |||||||||
Sbjct 909 AACAACA----A---TA-A-CTAATCTGATTATAGACTCTTCATGTGGTATC 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5