BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480740
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05080.1 | Symbols: | F-box and associated interaction doma... 375 3e-103
AT2G18320.1 | Symbols: | F-box associated ubiquitination effec... 239 5e-62
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 73.1 5e-12
AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6... 69.4 6e-11
AT3G22870.1 | Symbols: | F-box and associated interaction doma... 54.7 2e-06
> AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:2603001-2604176 FORWARD LENGTH=1176
Length=1176
Score = 375 bits (203), Expect = 3e-103
Identities = 506/642 (79%), Gaps = 62/642 (10%)
Strand=Plus/Plus
Query 1 ATGACGACGATGTTTGATCTTTCGCAGGATTTGGTAG-AGGAGATATTGTCTAGGGTTCC 59
||||||| |||||| |||||| ||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATGACGATGATGTTCGATCTTACGCAGGATTTGGT-GAAAGAGATATTGTCTAGGGTTCC 59
Query 60 GATAACTTCTCTTGGAGCAGTGAGATCCACTTGCAAAGCATGGAACG-TTTGATCTAAAA 118
||||||||| || ||||||||||||||||||||||||| |||||||| ||| ||| |||
Sbjct 60 GATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTT-ATCCAAAG 118
Query 119 ATCGGATTTTATGTAATGCAAAACCAAGGA-ATCAGTTTC-T-A-GGGTTCATGATGATG 174
|||||||| ||||||| |||||||||| | | ||||||| | | ||||||||| || |
Sbjct 119 ATCGGATTCTATGTAAAGCAAAACCAAA-ACAGCAGTTTCATCAAGGGTTCATGCTG-TC 176
Query 175 GGTTATACTAGGCTTTGTTCAATTAGGTTTAATCTC-CATGGAATACT-CAACGAAGACA 232
| | || ||||||| ||||||| ||||| ||| || | ||||| || ||| ||| |
Sbjct 177 TGAT-TA-TAGGCTTCGTTCAATGAGGTTCAATATCTC-TGGAAC-CTTCAAGGAAAAT- 231
Query 233 GG-GAAGAATTCGTTGA-TCCATCAATAAAGGAGATAGGTAATTTACTTAACCAAG--GA 288
|| |||||||||||| | | |||| |||||||||| |||||||| ||||| ||| ||
Sbjct 232 GGTGAAGAATTCGTTAACTT-ATCAGTAAAGGAGATTGGTAATTTTCTTAATAAAGTTGA 290
Query 289 GATATCAT-ATATGAAGTCTTGTATTGTGATGGCTTATTGTTGTTATGCGTGGCCAAGGA 347
|||||| | ||||| | | | | || | || | || |||||||| || ||| |||
Sbjct 291 GATATC-TCATATGTA-T-T---ACTGCGGCGG-T-ATA-TTGTTATGTGTCACCACGGA 341
Query 348 GCGCAACACTAGGCTTTTGGTTTGGAACCCATATTTAGGACAAACCAGATGGATCCAACC 407
| | |||||| || |||||||||| ||||| || |||| ||| ||||||||||
Sbjct 342 T---A-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAGGTGGATCCAACT 395
Query 408 CAAAACCGCAACGA-GAA--CCACATGCATGTATGCTTTGGGATATGACAACAACCAGAA 464
|||||| | ||| | | | |||| | | | || | | |||||||||||||| | ||
Sbjct 396 CAAAACAGAAACTATGTATTCCACGT---T-T-TG-TCTCAGATATGACAACAACAAAAA 449
Query 465 CCACAAGATATTGAAGGTTT-TCGATAAC---CAGGGCT-ACTACGAAATTTACGATTTT 519
|||||||||||||| ||||| ||||||| ||||||| | |||||||||||||||||
Sbjct 450 CCACAAGATATTGA-GGTTTCTCGATAATAAACAGGGCTCA-TACGAAATTTACGATTTG 507
Query 520 AAGTATAATTCATGGAGGGCTTTTGTTGACATTCCCAATTGGGAAATAGATTTTTG-TCG 578
|||| | |||||||||||||||||| || ||||||||| ||||| |||||| | | | |
Sbjct 508 AAGTCTTATTCATGGAGGGCTTTTGATGTCATTCCCAAGTGGGATATAGATGAT-GATGG 566
Query 579 GC-GAG-GCACATCGGTAAACGGGAA-TACTTACTTTTGGAC 617
|| ||| ||| |||||||| ||||| |||||||||| ||||
Sbjct 567 GCAGAGTGCA--TCGGTAAA-GGGAAATACTTACTTTAGGAC 605
> AT2G18320.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:7956220-7957531 FORWARD LENGTH=321
Length=321
Score = 239 bits (129), Expect = 5e-62
Identities = 176/197 (89%), Gaps = 9/197 (5%)
Strand=Plus/Plus
Query 811 TTTTATGAA-A-ATTTTGGCGGTTTCTTCATTGATGAAGAGAAGAAAGTCGTGGTGGTTT 868
||||||||| | | || |||||||||||||||||||||||||||||||| | |||||||
Sbjct 127 TTTTATGAAGAGA-CTT-GCGGTTTCTTCATTGATGAAGAGAAGAAAGTCTTCGTGGTTT 184
Query 869 TTGATTTAGATGAA-CATCAAGCCTACAGAAATATTGCTTACATCATTAGAGAGAATATA 927
|||| ||||||||| | ||||||||||| || ||| |||||||||||| |||||||||||
Sbjct 185 TTGAGTTAGATGAATC-TCAAGCCTACA-AA-TAT-GCTTACATCATTGGAGAGAATATA 240
Query 928 CGCTCGAAAAAAGTGGATCTTGGAGAAGTTAGAACATTGTATTGCCCAATTGTGTGTTCT 987
||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 241 TGCTTGAAAAAATTGGATCTTGGAGAAGTTAGAACATTTTCTTGCCCAATTGTGTGCTCC 300
Query 988 AGCTCTTATGTTCCAAG 1004
|||||||||||||||||
Sbjct 301 AGCTCTTATGTTCCAAG 317
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 73.1 bits (39), Expect = 5e-12
Identities = 64/75 (85%), Gaps = 5/75 (7%)
Strand=Plus/Plus
Query 660 TTTCTTAATATGTTTTGATTTTACAGCAGAGAGATTTGGACAG-GTTCTTCCTCTGCCAT 718
|||| || | ||||||||||||||||||||||||||||||| | || |||||||| || |
Sbjct 277 TTTC-TACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGT-CTTCCTCTTCCGT 334
Query 719 TTCAG-CATCATGAT 732
|||| | |||||||
Sbjct 335 TTCACTC-TCATGAT 348
> AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6916142
REVERSE LENGTH=1233
Length=1233
Score = 69.4 bits (37), Expect = 6e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 977 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGTGAAAATCAA 1019
||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1094 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAA 1136
> AT3G22870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8096230-8097471 FORWARD LENGTH=1242
Length=1242
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 992 CTTATGTTCCAAGTTTAGTGAAAATCAAG 1020
|||||||||||||||||||||||||||||
Sbjct 1079 CTTATGTTCCAAGTTTAGTGAAAATCAAG 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5