BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480740 Length=1035 Score E Sequences producing significant alignments: (Bits) Value AT4G05080.1 | Symbols: | F-box and associated interaction doma... 375 3e-103 AT2G18320.1 | Symbols: | F-box associated ubiquitination effec... 239 5e-62 AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 73.1 5e-12 AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6... 69.4 6e-11 AT3G22870.1 | Symbols: | F-box and associated interaction doma... 54.7 2e-06 > AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:2603001-2604176 FORWARD LENGTH=1176 Length=1176 Score = 375 bits (203), Expect = 3e-103 Identities = 506/642 (79%), Gaps = 62/642 (10%) Strand=Plus/Plus Query 1 ATGACGACGATGTTTGATCTTTCGCAGGATTTGGTAG-AGGAGATATTGTCTAGGGTTCC 59 ||||||| |||||| |||||| ||||||||||||| | | |||||||||||||||||||| Sbjct 1 ATGACGATGATGTTCGATCTTACGCAGGATTTGGT-GAAAGAGATATTGTCTAGGGTTCC 59 Query 60 GATAACTTCTCTTGGAGCAGTGAGATCCACTTGCAAAGCATGGAACG-TTTGATCTAAAA 118 ||||||||| || ||||||||||||||||||||||||| |||||||| ||| ||| ||| Sbjct 60 GATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTT-ATCCAAAG 118 Query 119 ATCGGATTTTATGTAATGCAAAACCAAGGA-ATCAGTTTC-T-A-GGGTTCATGATGATG 174 |||||||| ||||||| |||||||||| | | ||||||| | | ||||||||| || | Sbjct 119 ATCGGATTCTATGTAAAGCAAAACCAAA-ACAGCAGTTTCATCAAGGGTTCATGCTG-TC 176 Query 175 GGTTATACTAGGCTTTGTTCAATTAGGTTTAATCTC-CATGGAATACT-CAACGAAGACA 232 | | || ||||||| ||||||| ||||| ||| || | ||||| || ||| ||| | Sbjct 177 TGAT-TA-TAGGCTTCGTTCAATGAGGTTCAATATCTC-TGGAAC-CTTCAAGGAAAAT- 231 Query 233 GG-GAAGAATTCGTTGA-TCCATCAATAAAGGAGATAGGTAATTTACTTAACCAAG--GA 288 || |||||||||||| | | |||| |||||||||| |||||||| ||||| ||| || Sbjct 232 GGTGAAGAATTCGTTAACTT-ATCAGTAAAGGAGATTGGTAATTTTCTTAATAAAGTTGA 290 Query 289 GATATCAT-ATATGAAGTCTTGTATTGTGATGGCTTATTGTTGTTATGCGTGGCCAAGGA 347 |||||| | ||||| | | | | || | || | || |||||||| || ||| ||| Sbjct 291 GATATC-TCATATGTA-T-T---ACTGCGGCGG-T-ATA-TTGTTATGTGTCACCACGGA 341 Query 348 GCGCAACACTAGGCTTTTGGTTTGGAACCCATATTTAGGACAAACCAGATGGATCCAACC 407 | | |||||| || |||||||||| ||||| || |||| ||| |||||||||| Sbjct 342 T---A-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAGGTGGATCCAACT 395 Query 408 CAAAACCGCAACGA-GAA--CCACATGCATGTATGCTTTGGGATATGACAACAACCAGAA 464 |||||| | ||| | | | |||| | | | || | | |||||||||||||| | || Sbjct 396 CAAAACAGAAACTATGTATTCCACGT---T-T-TG-TCTCAGATATGACAACAACAAAAA 449 Query 465 CCACAAGATATTGAAGGTTT-TCGATAAC---CAGGGCT-ACTACGAAATTTACGATTTT 519 |||||||||||||| ||||| ||||||| ||||||| | ||||||||||||||||| Sbjct 450 CCACAAGATATTGA-GGTTTCTCGATAATAAACAGGGCTCA-TACGAAATTTACGATTTG 507 Query 520 AAGTATAATTCATGGAGGGCTTTTGTTGACATTCCCAATTGGGAAATAGATTTTTG-TCG 578 |||| | |||||||||||||||||| || ||||||||| ||||| |||||| | | | | Sbjct 508 AAGTCTTATTCATGGAGGGCTTTTGATGTCATTCCCAAGTGGGATATAGATGAT-GATGG 566 Query 579 GC-GAG-GCACATCGGTAAACGGGAA-TACTTACTTTTGGAC 617 || ||| ||| |||||||| ||||| |||||||||| |||| Sbjct 567 GCAGAGTGCA--TCGGTAAA-GGGAAATACTTACTTTAGGAC 605 > AT2G18320.1 | Symbols: | F-box associated ubiquitination effector family protein | chr2:7956220-7957531 FORWARD LENGTH=321 Length=321 Score = 239 bits (129), Expect = 5e-62 Identities = 176/197 (89%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 811 TTTTATGAA-A-ATTTTGGCGGTTTCTTCATTGATGAAGAGAAGAAAGTCGTGGTGGTTT 868 ||||||||| | | || |||||||||||||||||||||||||||||||| | ||||||| Sbjct 127 TTTTATGAAGAGA-CTT-GCGGTTTCTTCATTGATGAAGAGAAGAAAGTCTTCGTGGTTT 184 Query 869 TTGATTTAGATGAA-CATCAAGCCTACAGAAATATTGCTTACATCATTAGAGAGAATATA 927 |||| ||||||||| | ||||||||||| || ||| |||||||||||| ||||||||||| Sbjct 185 TTGAGTTAGATGAATC-TCAAGCCTACA-AA-TAT-GCTTACATCATTGGAGAGAATATA 240 Query 928 CGCTCGAAAAAAGTGGATCTTGGAGAAGTTAGAACATTGTATTGCCCAATTGTGTGTTCT 987 ||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| || Sbjct 241 TGCTTGAAAAAATTGGATCTTGGAGAAGTTAGAACATTTTCTTGCCCAATTGTGTGCTCC 300 Query 988 AGCTCTTATGTTCCAAG 1004 ||||||||||||||||| Sbjct 301 AGCTCTTATGTTCCAAG 317 > AT3G14030.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:4646272-4647124 REVERSE LENGTH=756 Length=756 Score = 73.1 bits (39), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Plus Query 660 TTTCTTAATATGTTTTGATTTTACAGCAGAGAGATTTGGACAG-GTTCTTCCTCTGCCAT 718 |||| || | ||||||||||||||||||||||||||||||| | || |||||||| || | Sbjct 277 TTTC-TACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGT-CTTCCTCTTCCGT 334 Query 719 TTCAG-CATCATGAT 732 |||| | ||||||| Sbjct 335 TTCACTC-TCATGAT 348 > AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6916142 REVERSE LENGTH=1233 Length=1233 Score = 69.4 bits (37), Expect = 6e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 977 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGTGAAAATCAA 1019 ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1094 TTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAA 1136 > AT3G22870.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8096230-8097471 FORWARD LENGTH=1242 Length=1242 Score = 54.7 bits (29), Expect = 2e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 992 CTTATGTTCCAAGTTTAGTGAAAATCAAG 1020 ||||||||||||||||||||||||||||| Sbjct 1079 CTTATGTTCCAAGTTTAGTGAAAATCAAG 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50736488470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5