BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480741

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18328.1 | Symbols: ATRL4, RL4 | RAD-like 4 | chr2:7964393-7...   604    1e-172


> AT2G18328.1 | Symbols: ATRL4, RL4 | RAD-like 4 | chr2:7964393-7964909 
FORWARD LENGTH=517
Length=517

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 378/402 (94%), Gaps = 5/402 (1%)
 Strand=Plus/Plus

Query  1    AAACCAATTCAAATCATCTCTATTCGTCATCAATACAAACCAACCTTCTCAATTCCTCAC  60
            |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct  1    AAACCAATTCAAGTCATCTCTATCCGTCAACAATACAAACCAACCTTCTCAATTCCTCTC  60

Query  61   TTTTGATCCACATTTT--C-A-CTAATGGCTTCCAGTTCAATCAGCAACTCATCATGGAC  116
            |||| |||||||||||  | | ||||||||||| |||||||| |||| ||||||||||||
Sbjct  61   TTTTCATCCACATTTTCACTAGCTAATGGCTTCTAGTTCAATGAGCACCTCATCATGGAC  120

Query  117  AGCGAAAGAGGACAAGCAATTCGAAATGGCGTTGGCAAAATACGACAAGGACACTCCTGA  176
            ||| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  121  AGCTAGAGAGGACAAGCAATTCGAAATGGCGTTGGCGAAATTCGACAAGGACACTCCTGA  180

Query  177  CCGTTGGCAAAAAATTGCAAGGGCAGTTGCTGGGAAATCAACTGAAGAAGTAAAGCGACA  236
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  CCGTTGGCAAAAAATTGCAAGGGCAGTTGGTGGGAAATCAACTGAAGAAGTAAAGCGACA  240

Query  237  CTATGAATTGCTCATTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG  296
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTATGAATTGCTCCTTAGGGATGTGAATGACATTGAGTCAGGACGCTATCCACAACCTAG  300

Query  297  GTACCGTAACACTAATTGAAGCCATTAATAAAATGCTTTTATATCAAGAAGATGACATTT  356
            |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct  301  GTACCGTAACACTAATTGAAGCCATTAATAAAATGCCTTTCTATCAAGAAGAGGACATTT  360

Query  357  GAGAGAACCTATAAAGAACTAAGAATT-CGATGTATTGCTTA  397
            ||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct  361  GAGAGAATCTATAAAGAACTAAGAATTTCGATGTATTTCTTA  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5