BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480743
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18340.1 | Symbols: | late embryogenesis abundant domain-co... 1107 0.0
> AT2G18340.1 | Symbols: | late embryogenesis abundant domain-containing
protein / LEA domain-containing protein | chr2:7969320-7971114
FORWARD LENGTH=1540
Length=1540
Score = 1107 bits (599), Expect = 0.0
Identities = 853/976 (87%), Gaps = 16/976 (2%)
Strand=Plus/Plus
Query 462 ATGCGAAGGATTTCGCTTATGATAAGGCTGGTGATG-CAAAGGACATGGCCTACGAAAAT 520
|||| ||||| | |||||||| || || || ||| |||| || | ||||| || ||
Sbjct 502 ATGCAAAGGACATGGCTTATGAGAAAGCGGGCCATGCCAAA-GATTTCGCCTATGATAAG 560
Query 521 GCGGGCTATGCTAAGGATTTCGCCTATGATA-AGGCAGGCA-ATGCAAAGGACATGGCCT 578
|| ||| |||||||||| | ||||| || | | || || | |||||||||| | ||||
Sbjct 561 GCAGGCAATGCTAAGGACATGGCCTACGAGACA-GC-GGGATATGCAAAGGATTTCGCCT 618
Query 579 ATGATAAGGGAGGCTACGCGAAGGATTTTGCCTATGATAAGGCTGGTGATGCAAAGGACA 638
|||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |
Sbjct 619 ATGATAAGGGAGGCTACGCGAAGGATGTTGCCTATGATAAGGCAGGCAATGCAAAGGATA 678
Query 639 TGGCCTATGAGAAGGCGCCCTATGCAAAGGACATGGCATATGAGAAGGCCAGCATAGCA- 697
|||| |||||||||||| |||| ||||||||||| || ||||||| | | | | ||
Sbjct 679 TGGCATATGAGAAGGCGGGAAATGCGAAGGACATGGCCTACGAGAAGG-CGGAACA-CAT 736
Query 698 AAA-GACATGGCCTACGAAAAAGCGGGGGATGCTTATGGAAGTGCGCAGAAAT-TGATGG 755
||| || | | || || |||| ||| |||||| |||||||| ||| | | ||||||
Sbjct 737 AAAGGATTTCACATATGATAAAGTGGGATCTGCTTACGGAAGTGCACAG-AGTATGATGG 795
Query 756 ACTCCGGCTATGATAAGGTCGGTGATGCTAAGGACATTGCCTATGAAAAGGCTGGCTAT- 814
|||| || |||||||||| ||||||||| |||||||| |||||||| ||||| ||| ||
Sbjct 796 ACTCTGGTTATGATAAGGCCGGTGATGCCAAGGACATGGCCTATGAGAAGGCAGGC-ATA 854
Query 815 GTAAAGGACATGGCCTACGAGAAAACAGGCAATGCCAAGGACG-GCGCCTATGAGAAGGC 873
||||| |||||||| || || ||| | || |||| ||||||| | || |||||||||||
Sbjct 855 GTAAAAGACATGGCATATGATAAAGCGGGGGATGCAAAGGACGTG-GCTTATGAGAAGGC 913
Query 874 GGGCATTGCCAAGGGCATGGCCTATGATAAGGCAGGCAATGCCAAGGACATGGCATATGA 933
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 914 TGGCATTGCCAAGGATATGGCCTATGATAAGGCGGGCAATGCCAAGGACATGGCCTATGA 973
Query 934 TAAGGTGGGATCTGCTTATGGCATTGCGCAGAAGGCAAAGGATTCTAGTTATGAGAAAGC 993
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 974 TAAGGTGGGATCTGCTTATGGCAGTGCGCAGAAGGCAAAGGATTCTGGTTATGAGAAAGC 1033
Query 994 TGGTGAGGCCAAAGACTTCGCCTACAAGAAGGCTGGCAATGCGAAAGACTTAGCTTACGA 1053
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1034 TGGTGAGGCCAAAGACTACGCCTACAAGAAGGCTGGCAATGCAAAAGACATAGCTTACGA 1093
Query 1054 AAAAGCGCAAGATGCAAAAGACTTTGCATATGACAAGGCGGGTTACGGATACGACAAGAC 1113
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1094 AAAGGCCCAAGATGCAAAAGACTTTGCATATGACAAGGCGGGTTACGGATACGACAAGGC 1153
Query 1114 CGGTGATGTGATTAGGATGGCTACAGACAAGAGTGGTGAAGCTTATGAAGGAGCTAAAGA 1173
||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||
Sbjct 1154 CGGTGATGTGATTAGGATGGCAACGGATAAGAGCGGTGAAGCCTATGAAGGAGCCAAAGA 1213
Query 1174 GAAGTCAAAGAGTGCCAAAGACATGGCTGGAGTAGCAATGGATGATTCTATTAACTACAT 1233
|||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||
Sbjct 1214 AAAGTCAAAGAGTGCCAAAGACACGGCAGGAGAAGCAATGGATGATTCTATTGACTACAT 1273
Query 1234 GAAAGACAAATCACACAATGCCAAAGATGAAGCAGCTAGGGGATTCGAAGAAGCCATGGA 1293
||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||
Sbjct 1274 GAAAGACAAATCACACAATGCCAAAGATGGAGCAACTAGAGGATTTGAAGAAGCCATGGA 1333
Query 1294 AAAAGTCGGCGAAAAGTACGGTACAGCCAAAGAATCCACAAAATACGCTTACGAAACCGC 1353
|||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1334 AAAAGTCGGCGAAAAGTACGGTGTAGCCAAAGAATCCACAAAATATGCTTATGAAACCGC 1393
Query 1354 AAAGAAAAAGGCTTCTCAAGTTGCGGGAGAAATAAAAGACCGTTATGCTGAGCTCTAAAA 1413
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1394 AAAGAAAAAGGCTTCTCAAGTTGCGGGAGAAATAAGAGACCGTTATGCTGAGCTCTAAAA 1453
Query 1414 CCAATTTGTTATACAA 1429
|||||||||||||||
Sbjct 1454 TCAATTTGTTATACAA 1469
Score = 896 bits (485), Expect = 0.0
Identities = 810/962 (84%), Gaps = 41/962 (4%)
Strand=Plus/Plus
Query 2 TTTAAAAAGGGACAAAAATAAATTGGTCAT--CAAATTCAAACAAGTTCGATTCGTAATC 59
||||||||||||||||| |||||||||||| |||||||||| ||||| |||||| ||||
Sbjct 8 TTTAAAAAGGGACAAAACTAAATTGGTCATAGCAAATTCAAAGAAGTTTGATTCGGAATC 67
Query 60 ACCGGTTAAAAGAGATGATGGAGAGAAGAAGAACGGCATTGGTATTGCTCGTTGTAGTGG 119
|| |||| ||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 68 ACTGGTT-AAAGAGATGATGGAGAGAAGAAGAACGGCATTGGTATTGTTTGTGGTAGTGG 126
Query 120 TGGTGATGACGTGGCAGGAGGGTGTTTTGGGGAAATGGGCAGAGTCGACGGCGAAGGAAA 179
||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 127 TGGTGTTGACGTGGCAAGAGGGTGTATTGGGGAAATGGTTAGAGTCGACGGCGAAGGAAA 186
Query 180 AGACCGGTTCATGGGCTGGTTGGGTCTCCGACAAAATCACCACTGGATTTGGTACCAAGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 187 AGACCGGTTCATGGGCTGGTTGGGTCTCCGACAAAATCACCACTGGATTTGGTACTAAGA 246
Query 240 AAGAGGAAACAGGAATTTATCAAAAAACTAAAGACGAAGCAAGAAAAGCGGCCCGAGCCG 299
|||| ||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 247 AAGAAGAAACAGGAATTTATCAAAAATCTAAAGATGAAGCAAGAAAAGCGGCTCAAGCCG 306
Query 300 CGGAAAACTATGCTTATGACAAGGCAAAATACGTTAAGGACTCTGCTCACGACAATGCAG 359
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 307 CGGAAAACTATGCTTATGACAAGGCAAATTACGTCAAGGACTCTGCTTACGACAATGCAG 366
Query 360 GTTACGCTAAGGATTTTGCCGAGAACAAGGCACAATACGCAAAAGATTTTGCTTATGACA 419
||||||| ||||||||||| |||||||||||| | |||||||| ||||| ||||||||||
Sbjct 367 GTTACGCCAAGGATTTTGCTGAGAACAAGGCAGAGTACGCAAAGGATTTCGCTTATGACA 426
Query 420 AGACTGGTGATGCAAAAAACATGGCCTGCGAAAATGCGGGCTATGCGAAGGATTTCGCTT 479
|| ||||||||||||| |||||||| | |||||||||||||||||| |||||||| || |
Sbjct 427 AGGCTGGTGATGCAAAGAACATGGCATACGAAAATGCGGGCTATGCTAAGGATTTTGCAT 486
Query 480 ATGATAAGGCTGGTGATGCAAAGGACATGGCCTACGA-AAATGCGGGCTATGCTAAGGAT 538
|||| |||||||||||||||||||||||||| || || ||| |||||| |||| || |||
Sbjct 487 ATGACAAGGCTGGTGATGCAAAGGACATGGCTTATGAGAAA-GCGGGCCATGCCAAAGAT 545
Query 539 TTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTATGATA-AGGGAGGCTACGC 597
|||||||||||||||||||||||||| |||||||||||||| || | || | || || ||
Sbjct 546 TTCGCCTATGATAAGGCAGGCAATGCTAAGGACATGGCCTACGAGACAGCG-GGATATGC 604
Query 598 GAAGGATTTTGCCTATGATAAGGCTGG-TGATGCAAAGGACATGGCCTATGAGAAGGC-G 655
|||||||| ||||||||||||| || | | || ||||| | |||||||| ||||| |
Sbjct 605 AAAGGATTTCGCCTATGATAAGGGAGGCT-ACGCGAAGGATGTTGCCTATGATAAGGCAG 663
Query 656 CCCTATGCAAAGGACATGGCATATGAGAAGGCCAGCA-TAGCAAAAGACATGGCCTACGA 714
| |||||||||| ||||||||||||||||| | | | || || ||||||||||||||
Sbjct 664 GCA-ATGCAAAGGATATGGCATATGAGAAGGCGGGAAAT-GCGAAGGACATGGCCTACGA 721
Query 715 AAAAGCGGGGGATGCTTAT-GGAAGTGCGCAGAA-ATTGA-TGG-ACTCCGGCT-ATGAT 769
|| |||| | | || ||| | | || | || | ||| | || | || | |
Sbjct 722 GAAGGCGGAACA--CATAAAGGATTT-CACATATGATAAAGTGGGA-TCTG-CTTACGG- 775
Query 770 AAG-GT-C-G-GTGATGCTAAGGACAT-TGCCTATGAAAAGGCTGGCT-ATGTAAAGGAC 823
||| | | | || ||| | |||| | || ||||| ||||| || | ||| ||||||
Sbjct 776 AAGTGCACAGAGT-ATGAT--GGAC-TCTGGTTATGATAAGGCCGG-TGATGCCAAGGAC 830
Query 824 ATGGCCTACGAGAAAACAGGCA-ATGCCAAGGACG-GCGCCTATGAGAAGGCGGGC-ATT 880
|||||||| ||||| |||||| | | || ||| | || ||||| || ||||| ||
Sbjct 831 ATGGCCTATGAGAAGGCAGGCATA-GTAAAAGACATG-GCATATGATAAAGCGGGGGAT- 887
Query 881 GCCAAGGGCATGGCCTATGATAAGGCAGGCAATGCCAAGGACATGGCATATGATAAGGTG 940
|| |||| | |||| ||||| ||||| |||| ||||||||| ||||| |||||||||| |
Sbjct 888 GCAAAGGACGTGGCTTATGAGAAGGCTGGCATTGCCAAGGATATGGCCTATGATAAGGCG 947
Query 941 GG 942
||
Sbjct 948 GG 949
Score = 219 bits (118), Expect = 8e-56
Identities = 188/222 (85%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 467 AAGGATTTCGCTTATGATAAGGCTGGTGATGCAAAGGACATGGCCTACGAAAATGCGGGC 526
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 408 AAGGATTTCGCTTATGACAAGGCTGGTGATGCAAAGAACATGGCATACGAAAATGCGGGC 467
Query 527 TATGCTAAGGATTTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTATGATAAG 586
|||||||||||||| || ||||| ||||| || |||||||||||||||| ||||| ||
Sbjct 468 TATGCTAAGGATTTTGCATATGACAAGGCTGGTGATGCAAAGGACATGGCTTATGAGAAA 527
Query 587 G-GAGGCTACGCGAAGGATTTTGCCTATGATAAGGCTGGTGATGCAAAGGACATGGCCTA 645
| | ||| | || || ||||| |||||||||||||| || |||| ||||||||||||||
Sbjct 528 GCG-GGCCATGCCAAAGATTTCGCCTATGATAAGGCAGGCAATGCTAAGGACATGGCCTA 586
Query 646 TGAGA-AGGCGCCCTATGCAAAGGACATGGCATATGAGAAGG 686
|||| || || ||||||||||| | || ||||| ||||
Sbjct 587 CGAGACAG-CGGGATATGCAAAGGATTTCGCCTATGATAAGG 627
Score = 108 bits (58), Expect = 2e-22
Identities = 210/282 (74%), Gaps = 16/282 (6%)
Strand=Plus/Plus
Query 348 ACGACAATGCAGGTTACGCTAAGGATTTTGCCGA-GAACAAGGCACAAT-ACGCAAAAGA 405
|||| ||||| || || |||||||||||||| | | ||||||| | | ||||| ||
Sbjct 454 ACGAAAATGCGGGCTATGCTAAGGATTTTGCATATG-ACAAGGC-TGGTGATGCAAAGGA 511
Query 406 TTTTGCTTATGA-CAAGACTGGTGATGCAAAAAACATGGCCTGCGAAAATGCGGGCTATG 464
| |||||||| ||| | || |||| ||| | | |||| || || || ||| |||
Sbjct 512 CATGGCTTATGAGAAAG-CGGGCCATGCCAAAGATTTCGCCTATGATAAGGCAGGCAATG 570
Query 465 CGAAGGATTTCGCTTATGATA-AGGCTGG-TGATGCAAAGGACATGGCCTACGAAAATGC 522
| ||||| | || || || | | || || | |||||||||| | ||||| || || |
Sbjct 571 CTAAGGACATGGCCTACGAGACA-GCGGGAT-ATGCAAAGGATTTCGCCTATGATAA-GG 627
Query 523 G-GGCTATGCTAAGGAT-TTCGCCTATGATAAGGCAGGCAATGCAAAGGACATGGCCTAT 580
| ||||| || |||||| || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 628 GAGGCTACGCGAAGGATGTT-GCCTATGATAAGGCAGGCAATGCAAAGGATATGGCATAT 686
Query 581 GATAAGG-GAGGCTACGCGAAGGATTTTGCCTATGATAAGGC 621
|| |||| | || | |||||||| | ||||| || |||||
Sbjct 687 GAGAAGGCG-GGAAATGCGAAGGACATGGCCTACGAGAAGGC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5