BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480745
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18370.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 725 0.0
> AT2G18370.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:7980625-7981758
FORWARD LENGTH=696
Length=696
Score = 725 bits (392), Expect = 0.0
Identities = 568/645 (88%), Gaps = 43/645 (7%)
Strand=Plus/Plus
Query 1 CAACGATGAATGTATTGAAAAGTCTAGCGATCATTTCCGTTCTCGGAATATTCTTTATAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 58 CAACGATGAATGTATTGAAATGTCTAGCGATCATTTCCGTTCTCGGAATATTCTTCATAC 117
Query 61 CTCGTTATTCTGAATCCGCGATATCTTGCAGTGTTGTGATACAGGATTTGCAGCCATGTG 120
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 118 CTCGTTATTCTGAATCCGCTATATCTTGCAGTGTTGTGTTACAGGATTTGCAGCCATGTG 177
Query 121 TGAGCTATTTGACCAGCGGAAGTGGAAACCCTCCGAAGACTTGCTGCGACGGAGTTAAGA 180
||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 178 TGAGCTACTTGACCAGCGGAAGTGGAAACCCTCCGGAGACTTGTTGCGACGGAGTTAAGA 237
Query 181 GTTTAGCGGCGGCAACCACCACATCTGCCGATAAGAAGGCGGCTTGTCAATGCATCAAGT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 GTTTAGCGGCGGCAACCACCACATCTGCCGATAAGAAGGCAGCTTGTCAATGCATCAAGT 297
Query 241 CAGTGGCTAATAGTGTTACCGTGAAGCCTGAATTGGCTCAGGCCCTTGCTAGCAATTGTG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 CAGTGGCTAATAGTGTTACCGTGAAGCCTGAATTGGCTCAAGCCCTTGCTAGCAATTGTG 357
Query 301 GCGCGAGCTTGCCCGTTGATGCATCTCCTACTGTCGACTGCACTACGGTTGGTTGAGAAA 360
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 358 GTGCGAGCTTGCCCGTTGATGCTTCTCCTACTGTCGACTGCACTACTGTTGGTTGAGAAA 417
Query 361 TTCACAACATCGATCAATGGTCCATATCGTCCTAATTAAGTATGCAATTTATATCAATAA 420
||| |||||| |||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 418 TTCTCAACATTGATCAATGGTCCATCTTGTCCTAATTAAGTACGCAATTTATATCAATAA 477
Query 421 AGGCGCGTCCAGCAGTAAGATATTTAGGCGAATGTA----TGT---A-----CATGTA-- 466
|||||| | | | ||| |||| |||||||||||| ||| | ||| ||
Sbjct 478 AGGCGC--C--GTA-TAATATATGTAGGCGAATGTACACATGTTGTAAGGTTCATTTAGT 532
Query 467 --C---ATGT--GTAC-TGTGGG-GTGCATT-TG-AGT-G-CATT-TGTGCAT--G--CA 508
| |||| |||| ||| ||| ||| || ||| | | || ||||||| | ||
Sbjct 533 TTCTTCATGTATGTACATGTACATGTGTATTGTGTAGTTGTCTTTGTGTGCATTTGTGCA 592
Query 509 ATGCAAT-CA-T--TT-ACCCCGGTGGTTTGGATATTACAGTGCTGTGGACTGATGAGTC 563
|||||| || | || |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 593 -TGCAATGCAATCATTTACCCCGGTGGTTTGGATATTACAGTGTTGTGAACTGATGAGTC 651
Query 564 ATGAAAAAACAGCTTTTCATGTTGTTGAATATTTTAAAAGGGCTC 608
||||||| ||||| |||| || |||||||||||||| |||||||
Sbjct 652 ATGAAAACACAGCGTTTCTTGATGTTGAATATTTTACGAGGGCTC 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5