BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480748

Length=458
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18400.1 | Symbols:  | ribosomal protein L6 family protein |...   523    5e-148


> AT2G18400.1 | Symbols:  | ribosomal protein L6 family protein 
| chr2:7989476-7990586 REVERSE LENGTH=643
Length=643

 Score =  523 bits (283),  Expect = 5e-148
 Identities = 337/363 (93%), Gaps = 3/363 (1%)
 Strand=Plus/Plus

Query  13   TAGGAGAAATAGAAATGGAAACCAAGTTTTTTCGATTCTTGAAGATTGTTGGAGTTGGAT  72
            ||||| | | ||| |||||| |||||||||| || |||||||||||||||||||||||||
Sbjct  132  TAGGATAGAGAGACATGGAAGCCAAGTTTTTCCGGTTCTTGAAGATTGTTGGAGTTGGAT  191

Query  73   ACAAAGCTAGAGCTGAGGAAGCAGGACGTTTCTTATACCTCAAATTGGGTTACAGTCATG  132
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  192  ACAAAGCTAGAGCTGAGGAAGCAGGGCGTTTCTTATACCTCAAATTGGGTTACAGTCACG  251

Query  133  AAGTTGAACTTGCTGTTCCTCCAGCGGTTCGGGTCTTTTGTTTCAAGAACAATGTGGTTT  192
            |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  252  AAGTCGAACTTGCGGTTCCTCCAGCGGTTCGAGTCTTTTGTTTCAAGAACAATGTGGTTT  311

Query  193  GCTGCACCGGAATCGACAAGCAGAGGGTGCATCAGTTTGCTGCAACAGTAAGGAGTTGCA  252
            ||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct  312  GCTGCACTGGAATCGACAAGCAAAGAGTGCATCAGTTTGCTGCAACGGTAAGGAGTTGCA  371

Query  253  AACCTCCTGAACCTTATAAGGGCAAAGGCATTATGTACATTGACGAAGTCGTCAAGAAGA  312
            |||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct  372  AACCCCCTGAACCTTATAAGGGCAAAGGCATAATGTACACTGATGAAGTCGTCAAGAAGA  431

Query  313  AACAAGGAAAGAAGTCGAAATGATCTCGCTTTGTATGCTTCTTC--C-TTCTTACTTTGC  369
            |||||||||||||||| |||||||||| ||||||||||||||||  | |||||||| |||
Sbjct  432  AACAAGGAAAGAAGTCCAAATGATCTCTCTTTGTATGCTTCTTCTTCCTTCTTACTCTGC  491

Query  370  AGA  372
            |||
Sbjct  492  AGA  494


 Score =  132 bits (71),  Expect = 3e-30
 Identities = 81/86 (94%), Gaps = 0/86 (0%)
 Strand=Plus/Plus

Query  373  TTATCAATAAGTTATATTTGGATGTATGAAACATCATTTTGTTGTTAAGTCTCTTTCAAT  432
            ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  535  TTATCAATAAGTTTTATTTGGTTGTATGAGACATCATTTTGTTGTTAAGTCTCTTTCAAT  594

Query  433  TAAACAAAATGAGAAGAGTTTGTCTT  458
             ||||||||||||||||||| |||||
Sbjct  595  GAAACAAAATGAGAAGAGTTCGTCTT  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21816203066


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5