BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480753
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18460.1 | Symbols: LCV3 | like COV 3 | chr2:8001320-8002998... 1230 0.0
> AT2G18460.1 | Symbols: LCV3 | like COV 3 | chr2:8001320-8002998
FORWARD LENGTH=898
Length=898
Score = 1230 bits (666), Expect = 0.0
Identities = 714/738 (97%), Gaps = 0/738 (0%)
Strand=Plus/Plus
Query 10 ATGGAAACGAGGGAGAGAGATCTAGAACGATTGATCCCGATGCATAAATCCGGAGCTTCT 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACGAGGGAGAGAGATCTAGAACGATTGATCCCGATGCATAAATCCGGAGCTTCT 60
Query 70 CCTCGCGACGTCGTTTTGTCTGTTCCGCCTTCTCCTCTCGCTTCTCCGATTCACGTCGCC 129
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 CCTCGCGACGTCGTTTTGTCTGTTCCGCCGTCTCCTCTCGCTTCTCCGATCCACGTCGCC 120
Query 130 GGAAAAGAGGCGATTTACAAAGTCATTAGAAGCTGGGCCTCCAAAAAGTTCATGACCGGA 189
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCAAAGAGGCGATTTACAAAGTCATTAGAAGCTGGGCCTCCAAAAAGTTCATGACCGGA 180
Query 190 TGTGTCATTCTGCTTCCAATCGCCGTCACATTCTACTTCACATGGTGGTTTATACATTTC 249
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 TGTGTCATTCTGCTACCAATCGCTGTCACATTCTACTTCACGTGGTGGTTTATACATTTC 240
Query 250 GTTGACGGATTCTTCTCCCCGATCTATACTCATCTCGGAATCAATATGTTCGGTCTTGGA 309
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTGATGGATTCTTCTCCCCGATCTATACTCATCTCGGAATCAATATGTTCGGTCTTGGC 300
Query 310 TTTGTGACATCCATCACATTCATATTTATGGTTGGTGTATTCATGTCTTCATGGCTTGGA 369
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TTTGTAACATCCATCACATTCATATTTATGGTTGGTGTGTTCATGTCTTCATGGCTTGGA 360
Query 370 GCTTCAGTTCTCAGTATTGGAGAATGGTTTATCAAGAAGATGCCTCTCGTAAGTTATATC 429
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 361 GCTTCAGTTCTCAGTATCGGAGAATGGTTTATCAAGAAGATGCCTCTCGTAAGCTACATC 420
Query 430 TACTCAGCTTCTAAGCAAATTAGCGGAGCAATCTCACCAGATCAAAGCTCAGGAGCATTC 489
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 TACTCAGCTTCTAAACAAATTAGTGGAGCAATCTCACCAGATCAAAGCTCAGGTGCATTC 480
Query 490 AAGGAGGTAGCGATTATCAGACATCCTCATATGGGAGAATACGCTTTTGGTTTCATTACA 549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGGAGGTAGCAATTATCAGACATCCTCATATGGGAGAATACGCTTTTGGTTTCATTACA 540
Query 550 TCGACTGTGATTCTTCGAGGCCGTGCTGGTGGAGAAGAACTCTGTTGTGTCTATGTTCCC 609
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TCGACTGTGATTCTTCGAGGCCGTGCTGGTGGAGAAGAACTATGTTGTGTCTATGTTCCC 600
Query 610 ACTAACCATCTTTATCTTGGAGACATTTTCCTCATTAGCTCAAAGGACATCATAAGACCT 669
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCAACCATCTTTACCTTGGAGACATTTTCCTCATTAGCTCAAAGGACATCATAAGACCT 660
Query 670 AATCTCTCAGTCCGGGAAGGCATAGAAATTGTCATCTCGGGTGGTATGTCGATTCCACAG 729
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 AATCTCTCAGTCCGGGAAGGCATAGAAATCGTCATCTCGGGTGGTATGTCGATTCCACAT 720
Query 730 ATACTAACAACGCTGGAC 747
|| |||||||| ||||||
Sbjct 721 ATGCTAACAACTCTGGAC 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5